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GRAMD1C (GRAM domain containing 1C)

Identity

Alias_symbol (synonym)DKFZp434C0328
Other alias-
HGNC (Hugo) GRAMD1C
LocusID (NCBI) 54762
Atlas_Id 64027
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 113897471 and ends at 113947174 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GDI2 (10p15.1) / GRAMD1C (3q13.31)TADA3 (3p25.3) / GRAMD1C (3q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRAMD1C   25252
Cards
Entrez_Gene (NCBI)GRAMD1C  54762  GRAM domain containing 1C
Aliases
GeneCards (Weizmann)GRAMD1C
Ensembl hg19 (Hinxton)ENSG00000178075 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178075 [Gene_View]  chr3:113897471-113947174 [Contig_View]  GRAMD1C [Vega]
ICGC DataPortalENSG00000178075
TCGA cBioPortalGRAMD1C
AceView (NCBI)GRAMD1C
Genatlas (Paris)GRAMD1C
WikiGenes54762
SOURCE (Princeton)GRAMD1C
Genetics Home Reference (NIH)GRAMD1C
Genomic and cartography
GoldenPath hg38 (UCSC)GRAMD1C  -     chr3:113897471-113947174 +  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRAMD1C  -     3q13.31   [Description]    (hg19-Feb_2009)
EnsemblGRAMD1C - 3q13.31 [CytoView hg19]  GRAMD1C - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBIGRAMD1C [Mapview hg19]  GRAMD1C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093181 AK097783 AK292846 AK292964 AK293884
RefSeq transcript (Entrez)NM_001172105 NM_017577
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRAMD1C
Cluster EST : UnigeneHs.24583 [ NCBI ]
CGAP (NCI)Hs.24583
Alternative Splicing GalleryENSG00000178075
Gene ExpressionGRAMD1C [ NCBI-GEO ]   GRAMD1C [ EBI - ARRAY_EXPRESS ]   GRAMD1C [ SEEK ]   GRAMD1C [ MEM ]
Gene Expression Viewer (FireBrowse)GRAMD1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54762
GTEX Portal (Tissue expression)GRAMD1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYS0
Splice isoforms : SwissVarQ8IYS0
PhosPhoSitePlusQ8IYS0
Domaine pattern : Prosite (Expaxy)VAST (PS51778)   
Domains : Interpro (EBI)DUF4782    GRAM   
Domain families : Pfam (Sanger)DUF4782 (PF16016)    GRAM (PF02893)   
Domain families : Pfam (NCBI)pfam16016    pfam02893   
Domain families : Smart (EMBL)GRAM (SM00568)  
Conserved Domain (NCBI)GRAMD1C
DMDM Disease mutations54762
Blocks (Seattle)GRAMD1C
SuperfamilyQ8IYS0
Human Protein AtlasENSG00000178075
Peptide AtlasQ8IYS0
IPIIPI00217850   IPI00946143   IPI00788696   IPI00790686   IPI00790712   IPI00946515   IPI00947281   IPI00945618   IPI00956166   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYS0
IntAct (EBI)Q8IYS0
FunCoupENSG00000178075
BioGRIDGRAMD1C
STRING (EMBL)GRAMD1C
ZODIACGRAMD1C
Ontologies - Pathways
QuickGOQ8IYS0
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkGRAMD1C
Atlas of Cancer Signalling NetworkGRAMD1C
Wikipedia pathwaysGRAMD1C
Orthology - Evolution
OrthoDB54762
GeneTree (enSembl)ENSG00000178075
Phylogenetic Trees/Animal Genes : TreeFamGRAMD1C
HOVERGENQ8IYS0
HOGENOMQ8IYS0
Homologs : HomoloGeneGRAMD1C
Homology/Alignments : Family Browser (UCSC)GRAMD1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAMD1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRAMD1C
dbVarGRAMD1C
ClinVarGRAMD1C
1000_GenomesGRAMD1C 
Exome Variant ServerGRAMD1C
ExAC (Exome Aggregation Consortium)GRAMD1C (select the gene name)
Genetic variants : HAPMAP54762
Genomic Variants (DGV)GRAMD1C [DGVbeta]
DECIPHERGRAMD1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRAMD1C 
Mutations
ICGC Data PortalGRAMD1C 
TCGA Data PortalGRAMD1C 
Broad Tumor PortalGRAMD1C
OASIS PortalGRAMD1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRAMD1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRAMD1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAMD1C
DgiDB (Drug Gene Interaction Database)GRAMD1C
DoCM (Curated mutations)GRAMD1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAMD1C (select a term)
intoGenGRAMD1C
Cancer3DGRAMD1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGRAMD1C
Genetic Testing Registry GRAMD1C
NextProtQ8IYS0 [Medical]
TSGene54762
GENETestsGRAMD1C
Target ValidationGRAMD1C
Huge Navigator GRAMD1C [HugePedia]
snp3D : Map Gene to Disease54762
BioCentury BCIQGRAMD1C
ClinGenGRAMD1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54762
Chemical/Pharm GKB GenePA142671709
Clinical trialGRAMD1C
Miscellaneous
canSAR (ICR)GRAMD1C (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAMD1C
EVEXGRAMD1C
GoPubMedGRAMD1C
iHOPGRAMD1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:52 CEST 2017

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