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GRAMD2 (GRAM domain containing 2)

Identity

Other alias-
HGNC (Hugo) GRAMD2
LocusID (NCBI) 196996
Atlas_Id 64028
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 72452147 and ends at 72490136 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MYO9A (15q23) / GRAMD2 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRAMD2   27287
Cards
Entrez_Gene (NCBI)GRAMD2  196996  GRAM domain containing 2
Aliases
GeneCards (Weizmann)GRAMD2
Ensembl hg19 (Hinxton)ENSG00000175318 [Gene_View]  chr15:72452147-72490136 [Contig_View]  GRAMD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175318 [Gene_View]  chr15:72452147-72490136 [Contig_View]  GRAMD2 [Vega]
ICGC DataPortalENSG00000175318
TCGA cBioPortalGRAMD2
AceView (NCBI)GRAMD2
Genatlas (Paris)GRAMD2
WikiGenes196996
SOURCE (Princeton)GRAMD2
Genetics Home Reference (NIH)GRAMD2
Genomic and cartography
GoldenPath hg19 (UCSC)GRAMD2  -     chr15:72452147-72490136 -  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GRAMD2  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblGRAMD2 - 15q23 [CytoView hg19]  GRAMD2 - 15q23 [CytoView hg38]
Mapping of homologs : NCBIGRAMD2 [Mapview hg19]  GRAMD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002016 AK095072 AK096501 AK303724 BC008057
RefSeq transcript (Entrez)NM_001012642
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)GRAMD2
Cluster EST : UnigeneHs.706272 [ NCBI ]
CGAP (NCI)Hs.706272
Alternative Splicing GalleryENSG00000175318
Gene ExpressionGRAMD2 [ NCBI-GEO ]   GRAMD2 [ EBI - ARRAY_EXPRESS ]   GRAMD2 [ SEEK ]   GRAMD2 [ MEM ]
Gene Expression Viewer (FireBrowse)GRAMD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196996
GTEX Portal (Tissue expression)GRAMD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUY3
Splice isoforms : SwissVarQ8IUY3
PhosPhoSitePlusQ8IUY3
Domains : Interpro (EBI)GRAM   
Domain families : Pfam (Sanger)GRAM (PF02893)   
Domain families : Pfam (NCBI)pfam02893   
Domain families : Smart (EMBL)GRAM (SM00568)  
Conserved Domain (NCBI)GRAMD2
DMDM Disease mutations196996
Blocks (Seattle)GRAMD2
SuperfamilyQ8IUY3
Human Protein AtlasENSG00000175318
Peptide AtlasQ8IUY3
HPRD13161
IPIIPI00216915   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUY3
IntAct (EBI)Q8IUY3
FunCoupENSG00000175318
BioGRIDGRAMD2
STRING (EMBL)GRAMD2
ZODIACGRAMD2
Ontologies - Pathways
QuickGOQ8IUY3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkGRAMD2
Atlas of Cancer Signalling NetworkGRAMD2
Wikipedia pathwaysGRAMD2
Orthology - Evolution
OrthoDB196996
GeneTree (enSembl)ENSG00000175318
Phylogenetic Trees/Animal Genes : TreeFamGRAMD2
HOVERGENQ8IUY3
HOGENOMQ8IUY3
Homologs : HomoloGeneGRAMD2
Homology/Alignments : Family Browser (UCSC)GRAMD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAMD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRAMD2
dbVarGRAMD2
ClinVarGRAMD2
1000_GenomesGRAMD2 
Exome Variant ServerGRAMD2
ExAC (Exome Aggregation Consortium)GRAMD2 (select the gene name)
Genetic variants : HAPMAP196996
Genomic Variants (DGV)GRAMD2 [DGVbeta]
DECIPHER (Syndromes)15:72452147-72490136  ENSG00000175318
CONAN: Copy Number AnalysisGRAMD2 
Mutations
ICGC Data PortalGRAMD2 
TCGA Data PortalGRAMD2 
Broad Tumor PortalGRAMD2
OASIS PortalGRAMD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRAMD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRAMD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAMD2
DgiDB (Drug Gene Interaction Database)GRAMD2
DoCM (Curated mutations)GRAMD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAMD2 (select a term)
intoGenGRAMD2
Cancer3DGRAMD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGRAMD2
Genetic Testing Registry GRAMD2
NextProtQ8IUY3 [Medical]
TSGene196996
GENETestsGRAMD2
Huge Navigator GRAMD2 [HugePedia]
snp3D : Map Gene to Disease196996
BioCentury BCIQGRAMD2
ClinGenGRAMD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196996
Chemical/Pharm GKB GenePA142671710
Clinical trialGRAMD2
Miscellaneous
canSAR (ICR)GRAMD2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAMD2
EVEXGRAMD2
GoPubMedGRAMD2
iHOPGRAMD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:52 CET 2017

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