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GRAMD2A (GRAM domain containing 2A)

Identity

Alias_namesGRAMD2
GRAM domain containing 2
Other alias
HGNC (Hugo) GRAMD2A
LocusID (NCBI) 196996
Atlas_Id 79943
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 72159806 and ends at 72197795 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GRAMD2A   27287
Cards
Entrez_Gene (NCBI)GRAMD2A  196996  GRAM domain containing 2A
AliasesGRAMD2
GeneCards (Weizmann)GRAMD2A
Ensembl hg19 (Hinxton)ENSG00000175318 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175318 [Gene_View]  chr15:72159806-72197795 [Contig_View]  GRAMD2A [Vega]
ICGC DataPortalENSG00000175318
TCGA cBioPortalGRAMD2A
AceView (NCBI)GRAMD2A
Genatlas (Paris)GRAMD2A
WikiGenes196996
SOURCE (Princeton)GRAMD2A
Genetics Home Reference (NIH)GRAMD2A
Genomic and cartography
GoldenPath hg38 (UCSC)GRAMD2A  -     chr15:72159806-72197795 -  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRAMD2A  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblGRAMD2A - 15q23 [CytoView hg19]  GRAMD2A - 15q23 [CytoView hg38]
Mapping of homologs : NCBIGRAMD2A [Mapview hg19]  GRAMD2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002016 AK095072 AK096501 AK303724 BC008057
RefSeq transcript (Entrez)NM_001012642
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRAMD2A
Cluster EST : UnigeneHs.706272 [ NCBI ]
CGAP (NCI)Hs.706272
Alternative Splicing GalleryENSG00000175318
Gene ExpressionGRAMD2A [ NCBI-GEO ]   GRAMD2A [ EBI - ARRAY_EXPRESS ]   GRAMD2A [ SEEK ]   GRAMD2A [ MEM ]
Gene Expression Viewer (FireBrowse)GRAMD2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196996
GTEX Portal (Tissue expression)GRAMD2A
Human Protein AtlasENSG00000175318-GRAMD2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUY3
Splice isoforms : SwissVarQ8IUY3
PhosPhoSitePlusQ8IUY3
Domains : Interpro (EBI)GRAM   
Domain families : Pfam (Sanger)GRAM (PF02893)   
Domain families : Pfam (NCBI)pfam02893   
Domain families : Smart (EMBL)GRAM (SM00568)  
Conserved Domain (NCBI)GRAMD2A
DMDM Disease mutations196996
Blocks (Seattle)GRAMD2A
SuperfamilyQ8IUY3
Human Protein Atlas [tissue]ENSG00000175318-GRAMD2A [tissue]
Peptide AtlasQ8IUY3
IPIIPI00216915   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUY3
IntAct (EBI)Q8IUY3
FunCoupENSG00000175318
BioGRIDGRAMD2A
STRING (EMBL)GRAMD2A
ZODIACGRAMD2A
Ontologies - Pathways
QuickGOQ8IUY3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkGRAMD2A
Atlas of Cancer Signalling NetworkGRAMD2A
Wikipedia pathwaysGRAMD2A
Orthology - Evolution
OrthoDB196996
GeneTree (enSembl)ENSG00000175318
Phylogenetic Trees/Animal Genes : TreeFamGRAMD2A
HOVERGENQ8IUY3
HOGENOMQ8IUY3
Homologs : HomoloGeneGRAMD2A
Homology/Alignments : Family Browser (UCSC)GRAMD2A
Gene fusions - Rearrangements
Tumor Fusion PortalGRAMD2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAMD2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRAMD2A
dbVarGRAMD2A
ClinVarGRAMD2A
1000_GenomesGRAMD2A 
Exome Variant ServerGRAMD2A
ExAC (Exome Aggregation Consortium)ENSG00000175318
GNOMAD BrowserENSG00000175318
Genetic variants : HAPMAP196996
Genomic Variants (DGV)GRAMD2A [DGVbeta]
DECIPHERGRAMD2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRAMD2A 
Mutations
ICGC Data PortalGRAMD2A 
TCGA Data PortalGRAMD2A 
Broad Tumor PortalGRAMD2A
OASIS PortalGRAMD2A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGRAMD2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAMD2A
DgiDB (Drug Gene Interaction Database)GRAMD2A
DoCM (Curated mutations)GRAMD2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAMD2A (select a term)
intoGenGRAMD2A
Cancer3DGRAMD2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGRAMD2A
MedgenGRAMD2A
Genetic Testing Registry GRAMD2A
NextProtQ8IUY3 [Medical]
TSGene196996
GENETestsGRAMD2A
Target ValidationGRAMD2A
Huge Navigator GRAMD2A [HugePedia]
snp3D : Map Gene to Disease196996
BioCentury BCIQGRAMD2A
ClinGenGRAMD2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196996
Chemical/Pharm GKB GenePA142671710
Clinical trialGRAMD2A
Miscellaneous
canSAR (ICR)GRAMD2A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAMD2A
EVEXGRAMD2A
GoPubMedGRAMD2A
iHOPGRAMD2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:31:21 CET 2017

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