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GRAMD3 (GRAM domain containing 3)

Identity

Alias_symbol (synonym)NS3TP2
FLJ21313
Other alias
HGNC (Hugo) GRAMD3
LocusID (NCBI) 65983
Atlas_Id 64029
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 125695788 and ends at 125829853 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GRAMD3 (5q23.2) / GLUL (1q25.3)GRAMD3 (5q23.2) / GRAMD3 (5q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRAMD3   24911
Cards
Entrez_Gene (NCBI)GRAMD3  65983  GRAM domain containing 3
AliasesNS3TP2
GeneCards (Weizmann)GRAMD3
Ensembl hg19 (Hinxton)ENSG00000155324 [Gene_View]  chr5:125695788-125829853 [Contig_View]  GRAMD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155324 [Gene_View]  chr5:125695788-125829853 [Contig_View]  GRAMD3 [Vega]
ICGC DataPortalENSG00000155324
TCGA cBioPortalGRAMD3
AceView (NCBI)GRAMD3
Genatlas (Paris)GRAMD3
WikiGenes65983
SOURCE (Princeton)GRAMD3
Genetics Home Reference (NIH)GRAMD3
Genomic and cartography
GoldenPath hg19 (UCSC)GRAMD3  -     chr5:125695788-125829853 +  5q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GRAMD3  -     5q23.2   [Description]    (hg38-Dec_2013)
EnsemblGRAMD3 - 5q23.2 [CytoView hg19]  GRAMD3 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIGRAMD3 [Mapview hg19]  GRAMD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024966 AK225829 AK293307 AK294656 AK296267
RefSeq transcript (Entrez)NM_001146319 NM_001146320 NM_001146321 NM_001146322 NM_023927
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)GRAMD3
Cluster EST : UnigeneHs.363558 [ NCBI ]
CGAP (NCI)Hs.363558
Alternative Splicing GalleryENSG00000155324
Gene ExpressionGRAMD3 [ NCBI-GEO ]   GRAMD3 [ EBI - ARRAY_EXPRESS ]   GRAMD3 [ SEEK ]   GRAMD3 [ MEM ]
Gene Expression Viewer (FireBrowse)GRAMD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65983
GTEX Portal (Tissue expression)GRAMD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HH9
Splice isoforms : SwissVarQ96HH9
PhosPhoSitePlusQ96HH9
Domains : Interpro (EBI)GRAM   
Domain families : Pfam (Sanger)GRAM (PF02893)   
Domain families : Pfam (NCBI)pfam02893   
Domain families : Smart (EMBL)GRAM (SM00568)  
Conserved Domain (NCBI)GRAMD3
DMDM Disease mutations65983
Blocks (Seattle)GRAMD3
SuperfamilyQ96HH9
Human Protein AtlasENSG00000155324
Peptide AtlasQ96HH9
HPRD11402
IPIIPI00305868   IPI01011874   IPI00922695   IPI00922305   IPI00922830   IPI01015182   IPI00964283   IPI00965148   IPI00929462   IPI00922170   IPI00965945   
Protein Interaction databases
DIP (DOE-UCLA)Q96HH9
IntAct (EBI)Q96HH9
FunCoupENSG00000155324
BioGRIDGRAMD3
STRING (EMBL)GRAMD3
ZODIACGRAMD3
Ontologies - Pathways
QuickGOQ96HH9
Ontology : AmiGOprotein binding  cytoplasmic microtubule  
Ontology : EGO-EBIprotein binding  cytoplasmic microtubule  
NDEx NetworkGRAMD3
Atlas of Cancer Signalling NetworkGRAMD3
Wikipedia pathwaysGRAMD3
Orthology - Evolution
OrthoDB65983
GeneTree (enSembl)ENSG00000155324
Phylogenetic Trees/Animal Genes : TreeFamGRAMD3
HOVERGENQ96HH9
HOGENOMQ96HH9
Homologs : HomoloGeneGRAMD3
Homology/Alignments : Family Browser (UCSC)GRAMD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAMD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRAMD3
dbVarGRAMD3
ClinVarGRAMD3
1000_GenomesGRAMD3 
Exome Variant ServerGRAMD3
ExAC (Exome Aggregation Consortium)GRAMD3 (select the gene name)
Genetic variants : HAPMAP65983
Genomic Variants (DGV)GRAMD3 [DGVbeta]
DECIPHER (Syndromes)5:125695788-125829853  ENSG00000155324
CONAN: Copy Number AnalysisGRAMD3 
Mutations
ICGC Data PortalGRAMD3 
TCGA Data PortalGRAMD3 
Broad Tumor PortalGRAMD3
OASIS PortalGRAMD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRAMD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRAMD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAMD3
DgiDB (Drug Gene Interaction Database)GRAMD3
DoCM (Curated mutations)GRAMD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAMD3 (select a term)
intoGenGRAMD3
Cancer3DGRAMD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGRAMD3
Genetic Testing Registry GRAMD3
NextProtQ96HH9 [Medical]
TSGene65983
GENETestsGRAMD3
Huge Navigator GRAMD3 [HugePedia]
snp3D : Map Gene to Disease65983
BioCentury BCIQGRAMD3
ClinGenGRAMD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65983
Chemical/Pharm GKB GenePA142671711
Clinical trialGRAMD3
Miscellaneous
canSAR (ICR)GRAMD3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAMD3
EVEXGRAMD3
GoPubMedGRAMD3
iHOPGRAMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:06:52 CET 2017

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