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GRAPL (GRB2-related adaptor protein-like)

Identity

Other alias-
HGNC (Hugo) GRAPL
LocusID (NCBI) 400581
Atlas_Id 64030
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 19030782 and ends at 19062148 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SYN3 (22q12.3) / GRAPL (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRAPL   37240
Cards
Entrez_Gene (NCBI)GRAPL  400581  GRB2-related adaptor protein-like
Aliases
GeneCards (Weizmann)GRAPL
Ensembl hg19 (Hinxton) [Gene_View]  chr17:19030782-19062148 [Contig_View]  GRAPL [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:19030782-19062148 [Contig_View]  GRAPL [Vega]
TCGA cBioPortalGRAPL
AceView (NCBI)GRAPL
Genatlas (Paris)GRAPL
WikiGenes400581
SOURCE (Princeton)GRAPL
Genetics Home Reference (NIH)GRAPL
Genomic and cartography
GoldenPath hg19 (UCSC)GRAPL  -     chr17:19030782-19062148 +  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GRAPL  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblGRAPL - 17p11.2 [CytoView hg19]  GRAPL - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIGRAPL [Mapview hg19]  GRAPL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK296691 BC026233 BC060883 BC157869
RefSeq transcript (Entrez)NM_001129778
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)GRAPL
Cluster EST : UnigeneHs.731125 [ NCBI ]
CGAP (NCI)Hs.731125
Gene ExpressionGRAPL [ NCBI-GEO ]   GRAPL [ EBI - ARRAY_EXPRESS ]   GRAPL [ SEEK ]   GRAPL [ MEM ]
Gene Expression Viewer (FireBrowse)GRAPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400581
GTEX Portal (Tissue expression)GRAPL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC17
Splice isoforms : SwissVarQ8TC17
PhosPhoSitePlusQ8TC17
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)    SH3 (PS50002)   
Domains : Interpro (EBI)SH2    SH3_domain   
Domain families : Pfam (Sanger)SH2 (PF00017)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00017    pfam00018   
Domain families : Smart (EMBL)SH2 (SM00252)  SH3 (SM00326)  
Conserved Domain (NCBI)GRAPL
DMDM Disease mutations400581
Blocks (Seattle)GRAPL
SuperfamilyQ8TC17
Peptide AtlasQ8TC17
IPIIPI00886800   IPI00964608   IPI00920998   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC17
IntAct (EBI)Q8TC17
BioGRIDGRAPL
STRING (EMBL)GRAPL
ZODIACGRAPL
Ontologies - Pathways
QuickGOQ8TC17
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGRAPL
Atlas of Cancer Signalling NetworkGRAPL
Wikipedia pathwaysGRAPL
Orthology - Evolution
OrthoDB400581
Phylogenetic Trees/Animal Genes : TreeFamGRAPL
HOVERGENQ8TC17
HOGENOMQ8TC17
Homologs : HomoloGeneGRAPL
Homology/Alignments : Family Browser (UCSC)GRAPL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRAPL
dbVarGRAPL
ClinVarGRAPL
1000_GenomesGRAPL 
Exome Variant ServerGRAPL
ExAC (Exome Aggregation Consortium)GRAPL (select the gene name)
Genetic variants : HAPMAP400581
Genomic Variants (DGV)GRAPL [DGVbeta]
DECIPHER (Syndromes)17:19030782-19062148  
CONAN: Copy Number AnalysisGRAPL 
Mutations
ICGC Data PortalGRAPL 
TCGA Data PortalGRAPL 
Broad Tumor PortalGRAPL
OASIS PortalGRAPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRAPL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRAPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAPL
DgiDB (Drug Gene Interaction Database)GRAPL
DoCM (Curated mutations)GRAPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAPL (select a term)
intoGenGRAPL
Cancer3DGRAPL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGRAPL
Genetic Testing Registry GRAPL
NextProtQ8TC17 [Medical]
TSGene400581
GENETestsGRAPL
Huge Navigator GRAPL [HugePedia]
snp3D : Map Gene to Disease400581
BioCentury BCIQGRAPL
ClinGenGRAPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400581
Chemical/Pharm GKB GenePA165431929
Clinical trialGRAPL
Miscellaneous
canSAR (ICR)GRAPL (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAPL
EVEXGRAPL
GoPubMedGRAPL
iHOPGRAPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:53 CET 2017

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