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GRASP (general receptor for phosphoinositides 1 associated scaffold protein)

Identity

Alias_namesGRP1 (general receptor for phosphoinositides 1)-associated scaffold protein
Alias_symbol (synonym)Tamalin
Other aliasTAMALIN
HGNC (Hugo) GRASP
LocusID (NCBI) 160622
Atlas_Id 64031
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52010492 and ends at 52015889 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRASP   18707
Cards
Entrez_Gene (NCBI)GRASP  160622  general receptor for phosphoinositides 1 associated scaffold protein
AliasesTAMALIN
GeneCards (Weizmann)GRASP
Ensembl hg19 (Hinxton)ENSG00000161835 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161835 [Gene_View]  chr12:52010492-52015889 [Contig_View]  GRASP [Vega]
ICGC DataPortalENSG00000161835
TCGA cBioPortalGRASP
AceView (NCBI)GRASP
Genatlas (Paris)GRASP
WikiGenes160622
SOURCE (Princeton)GRASP
Genetics Home Reference (NIH)GRASP
Genomic and cartography
GoldenPath hg38 (UCSC)GRASP  -     chr12:52010492-52015889 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRASP  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblGRASP - 12q13.13 [CytoView hg19]  GRASP - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIGRASP [Mapview hg19]  GRASP [Mapview hg38]
OMIM612027   
Gene and transcription
Genbank (Entrez)AJ227899 BC035500 BC052967 BC053666 HY035281
RefSeq transcript (Entrez)NM_001271856 NM_181711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRASP
Cluster EST : UnigeneHs.407202 [ NCBI ]
CGAP (NCI)Hs.407202
Alternative Splicing GalleryENSG00000161835
Gene ExpressionGRASP [ NCBI-GEO ]   GRASP [ EBI - ARRAY_EXPRESS ]   GRASP [ SEEK ]   GRASP [ MEM ]
Gene Expression Viewer (FireBrowse)GRASP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160622
GTEX Portal (Tissue expression)GRASP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6J2
Splice isoforms : SwissVarQ7Z6J2
PhosPhoSitePlusQ7Z6J2
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)GRASP
DMDM Disease mutations160622
Blocks (Seattle)GRASP
PDB (SRS)2PNT   
PDB (PDBSum)2PNT   
PDB (IMB)2PNT   
PDB (RSDB)2PNT   
Structural Biology KnowledgeBase2PNT   
SCOP (Structural Classification of Proteins)2PNT   
CATH (Classification of proteins structures)2PNT   
SuperfamilyQ7Z6J2
Human Protein AtlasENSG00000161835
Peptide AtlasQ7Z6J2
HPRD17077
IPIIPI00333325   IPI00651656   IPI01022792   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6J2
IntAct (EBI)Q7Z6J2
FunCoupENSG00000161835
BioGRIDGRASP
STRING (EMBL)GRASP
ZODIACGRASP
Ontologies - Pathways
QuickGOQ7Z6J2
Ontology : AmiGOplasma membrane  signal transduction  protein localization  cell junction  PDZ domain binding  ADP-ribosylation factor binding  identical protein binding  postsynaptic membrane  perinuclear region of cytoplasm  
Ontology : EGO-EBIplasma membrane  signal transduction  protein localization  cell junction  PDZ domain binding  ADP-ribosylation factor binding  identical protein binding  postsynaptic membrane  perinuclear region of cytoplasm  
NDEx NetworkGRASP
Atlas of Cancer Signalling NetworkGRASP
Wikipedia pathwaysGRASP
Orthology - Evolution
OrthoDB160622
GeneTree (enSembl)ENSG00000161835
Phylogenetic Trees/Animal Genes : TreeFamGRASP
HOVERGENQ7Z6J2
HOGENOMQ7Z6J2
Homologs : HomoloGeneGRASP
Homology/Alignments : Family Browser (UCSC)GRASP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRASP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRASP
dbVarGRASP
ClinVarGRASP
1000_GenomesGRASP 
Exome Variant ServerGRASP
ExAC (Exome Aggregation Consortium)GRASP (select the gene name)
Genetic variants : HAPMAP160622
Genomic Variants (DGV)GRASP [DGVbeta]
DECIPHERGRASP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRASP 
Mutations
ICGC Data PortalGRASP 
TCGA Data PortalGRASP 
Broad Tumor PortalGRASP
OASIS PortalGRASP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRASP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRASP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRASP
DgiDB (Drug Gene Interaction Database)GRASP
DoCM (Curated mutations)GRASP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRASP (select a term)
intoGenGRASP
Cancer3DGRASP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612027   
Orphanet
MedgenGRASP
Genetic Testing Registry GRASP
NextProtQ7Z6J2 [Medical]
TSGene160622
GENETestsGRASP
Huge Navigator GRASP [HugePedia]
snp3D : Map Gene to Disease160622
BioCentury BCIQGRASP
ClinGenGRASP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160622
Chemical/Pharm GKB GenePA38651
Clinical trialGRASP
Miscellaneous
canSAR (ICR)GRASP (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRASP
EVEXGRASP
GoPubMedGRASP
iHOPGRASP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:14:33 CEST 2017

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