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GREB1L (growth regulation by estrogen in breast cancer 1 like)

Identity

Alias_namesKIAA1772
KIAA1772
growth regulation by estrogen in breast cancer-like
Alias_symbol (synonym)FLJ13687
C18orf6
Other alias
HGNC (Hugo) GREB1L
LocusID (NCBI) 80000
Atlas_Id 51102
Location 18q11.1  [Link to chromosome band 18q11]
Location_base_pair Starts at 21242242 and ends at 21526112 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GREB1L (18q11.1) / CEP192 (18p11.21)GREB1L (18q11.1) / PLD3 (19q13.2)GREB1L (18q11.1) / TULP3 (12p13.33)
NAPG (18p11.22) / GREB1L (18q11.1)NPC1 (18q11.2) / GREB1L (18q11.1)GREB1L 18q11.1 / CEP192 18p11.21
NAPG 18p11.22 / GREB1L 18q11.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GREB1L   31042
Cards
Entrez_Gene (NCBI)GREB1L  80000  growth regulation by estrogen in breast cancer 1 like
AliasesC18orf6; KIAA1772
GeneCards (Weizmann)GREB1L
Ensembl hg19 (Hinxton)ENSG00000141449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141449 [Gene_View]  chr18:21242242-21526112 [Contig_View]  GREB1L [Vega]
ICGC DataPortalENSG00000141449
TCGA cBioPortalGREB1L
AceView (NCBI)GREB1L
Genatlas (Paris)GREB1L
WikiGenes80000
SOURCE (Princeton)GREB1L
Genetics Home Reference (NIH)GREB1L
Genomic and cartography
GoldenPath hg38 (UCSC)GREB1L  -     chr18:21242242-21526112 +  18q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GREB1L  -     18q11.1   [Description]    (hg19-Feb_2009)
EnsemblGREB1L - 18q11.1 [CytoView hg19]  GREB1L - 18q11.1 [CytoView hg38]
Mapping of homologs : NCBIGREB1L [Mapview hg19]  GREB1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA703199 AB051559 AK023749 AK293321 AK309723
RefSeq transcript (Entrez)NM_001142966 NM_024935
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GREB1L
Cluster EST : UnigeneHs.149020 [ NCBI ]
CGAP (NCI)Hs.149020
Alternative Splicing GalleryENSG00000141449
Gene ExpressionGREB1L [ NCBI-GEO ]   GREB1L [ EBI - ARRAY_EXPRESS ]   GREB1L [ SEEK ]   GREB1L [ MEM ]
Gene Expression Viewer (FireBrowse)GREB1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80000
GTEX Portal (Tissue expression)GREB1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C091   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C091  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C091
Splice isoforms : SwissVarQ9C091
PhosPhoSitePlusQ9C091
Domains : Interpro (EBI)GREB1    GREB1-like   
Domain families : Pfam (Sanger)GREB1 (PF15782)   
Domain families : Pfam (NCBI)pfam15782   
Conserved Domain (NCBI)GREB1L
DMDM Disease mutations80000
Blocks (Seattle)GREB1L
SuperfamilyQ9C091
Human Protein AtlasENSG00000141449
Peptide AtlasQ9C091
HPRD11161
IPIIPI00885180   IPI00885095   IPI00845324   IPI00884897   IPI00892696   
Protein Interaction databases
DIP (DOE-UCLA)Q9C091
IntAct (EBI)Q9C091
FunCoupENSG00000141449
BioGRIDGREB1L
STRING (EMBL)GREB1L
ZODIACGREB1L
Ontologies - Pathways
QuickGOQ9C091
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkGREB1L
Atlas of Cancer Signalling NetworkGREB1L
Wikipedia pathwaysGREB1L
Orthology - Evolution
OrthoDB80000
GeneTree (enSembl)ENSG00000141449
Phylogenetic Trees/Animal Genes : TreeFamGREB1L
HOVERGENQ9C091
HOGENOMQ9C091
Homologs : HomoloGeneGREB1L
Homology/Alignments : Family Browser (UCSC)GREB1L
Gene fusions - Rearrangements
Fusion : MitelmanGREB1L/CEP192 [18q11.1/18p11.21]  
Fusion : MitelmanNAPG/GREB1L [18p11.22/18q11.1]  [t(18;18)(p11;q11)]  
Fusion : MitelmanNPC1/GREB1L [18q11.2/18q11.1]  [t(18;18)(q11;q11)]  
Fusion: TCGAGREB1L 18q11.1 CEP192 18p11.21 BRCA
Fusion: TCGANAPG 18p11.22 GREB1L 18q11.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGREB1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GREB1L
dbVarGREB1L
ClinVarGREB1L
1000_GenomesGREB1L 
Exome Variant ServerGREB1L
ExAC (Exome Aggregation Consortium)GREB1L (select the gene name)
Genetic variants : HAPMAP80000
Genomic Variants (DGV)GREB1L [DGVbeta]
DECIPHERGREB1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGREB1L 
Mutations
ICGC Data PortalGREB1L 
TCGA Data PortalGREB1L 
Broad Tumor PortalGREB1L
OASIS PortalGREB1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGREB1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGREB1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GREB1L
DgiDB (Drug Gene Interaction Database)GREB1L
DoCM (Curated mutations)GREB1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GREB1L (select a term)
intoGenGREB1L
Cancer3DGREB1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGREB1L
Genetic Testing Registry GREB1L
NextProtQ9C091 [Medical]
TSGene80000
GENETestsGREB1L
Target ValidationGREB1L
Huge Navigator GREB1L [HugePedia]
snp3D : Map Gene to Disease80000
BioCentury BCIQGREB1L
ClinGenGREB1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80000
Chemical/Pharm GKB GenePA165429012
Clinical trialGREB1L
Miscellaneous
canSAR (ICR)GREB1L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGREB1L
EVEXGREB1L
GoPubMedGREB1L
iHOPGREB1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:58 CEST 2017

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