Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GRIFIN (galectin-related inter-fiber protein)

Identity

Other alias-
HGNC (Hugo) GRIFIN
LocusID (NCBI) 402635
Atlas_Id 64038
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2514772 and ends at 2516017 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRIFIN   4577
Cards
Entrez_Gene (NCBI)GRIFIN  402635  galectin-related inter-fiber protein
Aliases
GeneCards (Weizmann)GRIFIN
Ensembl hg19 (Hinxton) [Gene_View]  chr7:2514772-2516017 [Contig_View]  GRIFIN [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:2514772-2516017 [Contig_View]  GRIFIN [Vega]
TCGA cBioPortalGRIFIN
AceView (NCBI)GRIFIN
Genatlas (Paris)GRIFIN
WikiGenes402635
SOURCE (Princeton)GRIFIN
Genetics Home Reference (NIH)GRIFIN
Genomic and cartography
GoldenPath hg19 (UCSC)GRIFIN  -     chr7:2514772-2516017 -  7p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GRIFIN  -     7p22.3   [Description]    (hg38-Dec_2013)
EnsemblGRIFIN - 7p22.3 [CytoView hg19]  GRIFIN - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIGRIFIN [Mapview hg19]  GRIFIN [Mapview hg38]
Gene and transcription
Genbank (Entrez)CN281639
RefSeq transcript (Entrez)NM_001291784
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_032051 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)GRIFIN
Gene ExpressionGRIFIN [ NCBI-GEO ]   GRIFIN [ EBI - ARRAY_EXPRESS ]   GRIFIN [ SEEK ]   GRIFIN [ MEM ]
Gene Expression Viewer (FireBrowse)GRIFIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402635
GTEX Portal (Tissue expression)GRIFIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D1Z8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D1Z8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D1Z8
Splice isoforms : SwissVarA4D1Z8
PhosPhoSitePlusA4D1Z8
Domaine pattern : Prosite (Expaxy)GALECTIN (PS51304)   
Domains : Interpro (EBI)ConA-like_dom    Galectin_CRD    Grifin   
Domain families : Pfam (Sanger)Gal-bind_lectin (PF00337)   
Domain families : Pfam (NCBI)pfam00337   
Domain families : Smart (EMBL)Gal-bind_lectin (SM00908)  GLECT (SM00276)  
Conserved Domain (NCBI)GRIFIN
DMDM Disease mutations402635
Blocks (Seattle)GRIFIN
SuperfamilyA4D1Z8
Peptide AtlasA4D1Z8
Protein Interaction databases
DIP (DOE-UCLA)A4D1Z8
IntAct (EBI)A4D1Z8
BioGRIDGRIFIN
STRING (EMBL)GRIFIN
ZODIACGRIFIN
Ontologies - Pathways
QuickGOA4D1Z8
Ontology : AmiGOcarbohydrate binding  
Ontology : EGO-EBIcarbohydrate binding  
NDEx NetworkGRIFIN
Atlas of Cancer Signalling NetworkGRIFIN
Wikipedia pathwaysGRIFIN
Orthology - Evolution
OrthoDB402635
Phylogenetic Trees/Animal Genes : TreeFamGRIFIN
HOVERGENA4D1Z8
HOGENOMA4D1Z8
Homologs : HomoloGeneGRIFIN
Homology/Alignments : Family Browser (UCSC)GRIFIN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRIFIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRIFIN
dbVarGRIFIN
ClinVarGRIFIN
1000_GenomesGRIFIN 
Exome Variant ServerGRIFIN
ExAC (Exome Aggregation Consortium)GRIFIN (select the gene name)
Genetic variants : HAPMAP402635
Genomic Variants (DGV)GRIFIN [DGVbeta]
DECIPHER (Syndromes)7:2514772-2516017  
CONAN: Copy Number AnalysisGRIFIN 
Mutations
ICGC Data PortalGRIFIN 
TCGA Data PortalGRIFIN 
Broad Tumor PortalGRIFIN
OASIS PortalGRIFIN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGRIFIN
BioMutasearch GRIFIN
DgiDB (Drug Gene Interaction Database)GRIFIN
DoCM (Curated mutations)GRIFIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRIFIN (select a term)
intoGenGRIFIN
Cancer3DGRIFIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGRIFIN
Genetic Testing Registry GRIFIN
NextProtA4D1Z8 [Medical]
TSGene402635
GENETestsGRIFIN
Huge Navigator GRIFIN [HugePedia]
snp3D : Map Gene to Disease402635
BioCentury BCIQGRIFIN
ClinGenGRIFIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402635
Chemical/Pharm GKB GenePA28972
Clinical trialGRIFIN
Miscellaneous
canSAR (ICR)GRIFIN (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRIFIN
EVEXGRIFIN
GoPubMedGRIFIN
iHOPGRIFIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:06:54 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.