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GRIN3A (glutamate ionotropic receptor NMDA type subunit 3A)

Identity

Alias_namesglutamate receptor
Alias_symbol (synonym)GluN3A
Other aliasNMDAR-L
NR3A
HGNC (Hugo) GRIN3A
LocusID (NCBI) 116443
Atlas_Id 55598
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 101569352 and ends at 101738580 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRIN3A   16767
Cards
Entrez_Gene (NCBI)GRIN3A  116443  glutamate ionotropic receptor NMDA type subunit 3A
AliasesGluN3A; NMDAR-L; NR3A
GeneCards (Weizmann)GRIN3A
Ensembl hg19 (Hinxton)ENSG00000198785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198785 [Gene_View]  chr9:101569352-101738580 [Contig_View]  GRIN3A [Vega]
ICGC DataPortalENSG00000198785
TCGA cBioPortalGRIN3A
AceView (NCBI)GRIN3A
Genatlas (Paris)GRIN3A
WikiGenes116443
SOURCE (Princeton)GRIN3A
Genetics Home Reference (NIH)GRIN3A
Genomic and cartography
GoldenPath hg38 (UCSC)GRIN3A  -     chr9:101569352-101738580 -  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRIN3A  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblGRIN3A - 9q31.1 [CytoView hg19]  GRIN3A - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIGRIN3A [Mapview hg19]  GRIN3A [Mapview hg38]
OMIM606650   
Gene and transcription
Genbank (Entrez)AB075853 AF416558 AJ416950 AK127342 AL137422
RefSeq transcript (Entrez)NM_133445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRIN3A
Cluster EST : UnigeneHs.654783 [ NCBI ]
CGAP (NCI)Hs.654783
Alternative Splicing GalleryENSG00000198785
Gene ExpressionGRIN3A [ NCBI-GEO ]   GRIN3A [ EBI - ARRAY_EXPRESS ]   GRIN3A [ SEEK ]   GRIN3A [ MEM ]
Gene Expression Viewer (FireBrowse)GRIN3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116443
GTEX Portal (Tissue expression)GRIN3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCU5
Splice isoforms : SwissVarQ8TCU5
PhosPhoSitePlusQ8TCU5
Domains : Interpro (EBI)Glu/Gly-bd    Iono_rcpt_met    Iontro_rcpt    Peripla_BP_I   
Domain families : Pfam (Sanger)Lig_chan (PF00060)    Lig_chan-Glu_bd (PF10613)   
Domain families : Pfam (NCBI)pfam00060    pfam10613   
Domain families : Smart (EMBL)Lig_chan-Glu_bd (SM00918)  PBPe (SM00079)  
Conserved Domain (NCBI)GRIN3A
DMDM Disease mutations116443
Blocks (Seattle)GRIN3A
SuperfamilyQ8TCU5
Human Protein AtlasENSG00000198785
Peptide AtlasQ8TCU5
HPRD09443
IPIIPI00455154   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCU5
IntAct (EBI)Q8TCU5
FunCoupENSG00000198785
BioGRIDGRIN3A
STRING (EMBL)GRIN3A
ZODIACGRIN3A
Ontologies - Pathways
QuickGOQ8TCU5
Ontology : AmiGONMDA glutamate receptor activity  NMDA glutamate receptor activity  extracellular-glutamate-gated ion channel activity  calcium channel activity  protein binding  calcium ion transport  postsynaptic density  membrane  integral component of membrane  dendrite development  glycine binding  NMDA selective glutamate receptor complex  cell junction  regulation of ion transmembrane transport  ionotropic glutamate receptor signaling pathway  identical protein binding  neuron projection  neuronal cell body  synapse  postsynaptic membrane  response to ethanol  protein phosphatase 2A binding  excitatory postsynaptic potential  prepulse inhibition  calcium ion transmembrane transport  
Ontology : EGO-EBINMDA glutamate receptor activity  NMDA glutamate receptor activity  extracellular-glutamate-gated ion channel activity  calcium channel activity  protein binding  calcium ion transport  postsynaptic density  membrane  integral component of membrane  dendrite development  glycine binding  NMDA selective glutamate receptor complex  cell junction  regulation of ion transmembrane transport  ionotropic glutamate receptor signaling pathway  identical protein binding  neuron projection  neuronal cell body  synapse  postsynaptic membrane  response to ethanol  protein phosphatase 2A binding  excitatory postsynaptic potential  prepulse inhibition  calcium ion transmembrane transport  
Pathways : KEGGNeuroactive ligand-receptor interaction    Glutamatergic synapse    Cocaine addiction    Amphetamine addiction    Nicotine addiction    Alcoholism   
NDEx NetworkGRIN3A
Atlas of Cancer Signalling NetworkGRIN3A
Wikipedia pathwaysGRIN3A
Orthology - Evolution
OrthoDB116443
GeneTree (enSembl)ENSG00000198785
Phylogenetic Trees/Animal Genes : TreeFamGRIN3A
HOVERGENQ8TCU5
HOGENOMQ8TCU5
Homologs : HomoloGeneGRIN3A
Homology/Alignments : Family Browser (UCSC)GRIN3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRIN3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRIN3A
dbVarGRIN3A
ClinVarGRIN3A
1000_GenomesGRIN3A 
Exome Variant ServerGRIN3A
ExAC (Exome Aggregation Consortium)GRIN3A (select the gene name)
Genetic variants : HAPMAP116443
Genomic Variants (DGV)GRIN3A [DGVbeta]
DECIPHERGRIN3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRIN3A 
Mutations
ICGC Data PortalGRIN3A 
TCGA Data PortalGRIN3A 
Broad Tumor PortalGRIN3A
OASIS PortalGRIN3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRIN3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRIN3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRIN3A
DgiDB (Drug Gene Interaction Database)GRIN3A
DoCM (Curated mutations)GRIN3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRIN3A (select a term)
intoGenGRIN3A
Cancer3DGRIN3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606650   
Orphanet
MedgenGRIN3A
Genetic Testing Registry GRIN3A
NextProtQ8TCU5 [Medical]
TSGene116443
GENETestsGRIN3A
Huge Navigator GRIN3A [HugePedia]
snp3D : Map Gene to Disease116443
BioCentury BCIQGRIN3A
ClinGenGRIN3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116443
Chemical/Pharm GKB GenePA28983
Clinical trialGRIN3A
Miscellaneous
canSAR (ICR)GRIN3A (select the gene name)
Probes
Litterature
PubMed83 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRIN3A
EVEXGRIN3A
GoPubMedGRIN3A
iHOPGRIN3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:17:59 CEST 2017

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