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GRIP2 (glutamate receptor interacting protein 2)

Identity

Alias_symbol (synonym)KIAA1719
Other alias-
HGNC (Hugo) GRIP2
LocusID (NCBI) 80852
Atlas_Id 54347
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 14489111 and ends at 14540343 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCL11A (2p16.1) / GRIP2 (3p25.1)CLRN1-AS1 (3q25.1) / GRIP2 (3p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRIP2   23841
Cards
Entrez_Gene (NCBI)GRIP2  80852  glutamate receptor interacting protein 2
Aliases
GeneCards (Weizmann)GRIP2
Ensembl hg19 (Hinxton)ENSG00000144596 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144596 [Gene_View]  chr3:14489111-14540343 [Contig_View]  GRIP2 [Vega]
ICGC DataPortalENSG00000144596
TCGA cBioPortalGRIP2
AceView (NCBI)GRIP2
Genatlas (Paris)GRIP2
WikiGenes80852
SOURCE (Princeton)GRIP2
Genetics Home Reference (NIH)GRIP2
Genomic and cartography
GoldenPath hg38 (UCSC)GRIP2  -     chr3:14489111-14540343 -  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRIP2  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblGRIP2 - 3p25.1 [CytoView hg19]  GRIP2 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBIGRIP2 [Mapview hg19]  GRIP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051506 AF052177 AK024507 AK074145 AK095762
RefSeq transcript (Entrez)NM_001080423
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRIP2
Cluster EST : UnigeneHs.517819 [ NCBI ]
CGAP (NCI)Hs.517819
Alternative Splicing GalleryENSG00000144596
Gene ExpressionGRIP2 [ NCBI-GEO ]   GRIP2 [ EBI - ARRAY_EXPRESS ]   GRIP2 [ SEEK ]   GRIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)GRIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80852
GTEX Portal (Tissue expression)GRIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0E4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0E4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0E4
Splice isoforms : SwissVarQ9C0E4
PhosPhoSitePlusQ9C0E4
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)GRIP2    PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)GRIP2
DMDM Disease mutations80852
Blocks (Seattle)GRIP2
PDB (SRS)1V62    1X5R   
PDB (PDBSum)1V62    1X5R   
PDB (IMB)1V62    1X5R   
PDB (RSDB)1V62    1X5R   
Structural Biology KnowledgeBase1V62    1X5R   
SCOP (Structural Classification of Proteins)1V62    1X5R   
CATH (Classification of proteins structures)1V62    1X5R   
SuperfamilyQ9C0E4
Human Protein AtlasENSG00000144596
Peptide AtlasQ9C0E4
IPIIPI00737140   IPI00383056   IPI00180230   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0E4
IntAct (EBI)Q9C0E4
FunCoupENSG00000144596
BioGRIDGRIP2
STRING (EMBL)GRIP2
ZODIACGRIP2
Ontologies - Pathways
QuickGOQ9C0E4
Ontology : AmiGOcytosol  plasma membrane  receptor signaling complex scaffold activity  
Ontology : EGO-EBIcytosol  plasma membrane  receptor signaling complex scaffold activity  
NDEx NetworkGRIP2
Atlas of Cancer Signalling NetworkGRIP2
Wikipedia pathwaysGRIP2
Orthology - Evolution
OrthoDB80852
GeneTree (enSembl)ENSG00000144596
Phylogenetic Trees/Animal Genes : TreeFamGRIP2
HOVERGENQ9C0E4
HOGENOMQ9C0E4
Homologs : HomoloGeneGRIP2
Homology/Alignments : Family Browser (UCSC)GRIP2
Gene fusions - Rearrangements
Fusion : MitelmanBCL11A/GRIP2 [2p16.1/3p25.1]  [t(2;3)(p16;p25)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRIP2
dbVarGRIP2
ClinVarGRIP2
1000_GenomesGRIP2 
Exome Variant ServerGRIP2
ExAC (Exome Aggregation Consortium)GRIP2 (select the gene name)
Genetic variants : HAPMAP80852
Genomic Variants (DGV)GRIP2 [DGVbeta]
DECIPHERGRIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRIP2 
Mutations
ICGC Data PortalGRIP2 
TCGA Data PortalGRIP2 
Broad Tumor PortalGRIP2
OASIS PortalGRIP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGRIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRIP2
DgiDB (Drug Gene Interaction Database)GRIP2
DoCM (Curated mutations)GRIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRIP2 (select a term)
intoGenGRIP2
Cancer3DGRIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGRIP2
Genetic Testing Registry GRIP2
NextProtQ9C0E4 [Medical]
TSGene80852
GENETestsGRIP2
Target ValidationGRIP2
Huge Navigator GRIP2 [HugePedia]
snp3D : Map Gene to Disease80852
BioCentury BCIQGRIP2
ClinGenGRIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80852
Chemical/Pharm GKB GenePA134986170
Clinical trialGRIP2
Miscellaneous
canSAR (ICR)GRIP2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRIP2
EVEXGRIP2
GoPubMedGRIP2
iHOPGRIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:02:30 CEST 2017

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