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GRSF1 (G-rich RNA sequence binding factor 1)

Identity

Other alias-
HGNC (Hugo) GRSF1
LocusID (NCBI) 2926
Atlas_Id 64059
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70815782 and ends at 70839503 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCK (4q13.3) / GRSF1 (4q13.3)GRSF1 (4q13.3) / CIAO1 (2q11.2)GRSF1 (4q13.3) / COL3A1 (2q32.2)
GRSF1 (4q13.3) / ZSWIM6 (5q12.1)GRTP1 (13q34) / GRSF1 (4q13.3)IVNS1ABP (1q25.3) / GRSF1 (4q13.3)
UNC50 (2q11.2) / GRSF1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRSF1   4610
Cards
Entrez_Gene (NCBI)GRSF1  2926  G-rich RNA sequence binding factor 1
Aliases
GeneCards (Weizmann)GRSF1
Ensembl hg19 (Hinxton)ENSG00000132463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132463 [Gene_View]  chr4:70815782-70839503 [Contig_View]  GRSF1 [Vega]
ICGC DataPortalENSG00000132463
TCGA cBioPortalGRSF1
AceView (NCBI)GRSF1
Genatlas (Paris)GRSF1
WikiGenes2926
SOURCE (Princeton)GRSF1
Genetics Home Reference (NIH)GRSF1
Genomic and cartography
GoldenPath hg38 (UCSC)GRSF1  -     chr4:70815782-70839503 -  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRSF1  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblGRSF1 - 4q13.3 [CytoView hg19]  GRSF1 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIGRSF1 [Mapview hg19]  GRSF1 [Mapview hg38]
OMIM604851   
Gene and transcription
Genbank (Entrez)AI151431 AK023187 AK055499 AK056891 AK090755
RefSeq transcript (Entrez)NM_001098477 NM_002092
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRSF1
Cluster EST : UnigeneHs.309763 [ NCBI ]
CGAP (NCI)Hs.309763
Alternative Splicing GalleryENSG00000132463
Gene ExpressionGRSF1 [ NCBI-GEO ]   GRSF1 [ EBI - ARRAY_EXPRESS ]   GRSF1 [ SEEK ]   GRSF1 [ MEM ]
Gene Expression Viewer (FireBrowse)GRSF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2926
GTEX Portal (Tissue expression)GRSF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12849   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12849  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12849
Splice isoforms : SwissVarQ12849
PhosPhoSitePlusQ12849
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)GRSF1    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)GRSF1
DMDM Disease mutations2926
Blocks (Seattle)GRSF1
PDB (SRS)2LMI    4QU6    4QU7   
PDB (PDBSum)2LMI    4QU6    4QU7   
PDB (IMB)2LMI    4QU6    4QU7   
PDB (RSDB)2LMI    4QU6    4QU7   
Structural Biology KnowledgeBase2LMI    4QU6    4QU7   
SCOP (Structural Classification of Proteins)2LMI    4QU6    4QU7   
CATH (Classification of proteins structures)2LMI    4QU6    4QU7   
SuperfamilyQ12849
Human Protein AtlasENSG00000132463
Peptide AtlasQ12849
HPRD07276
IPIIPI00478657   IPI00940450   IPI00979483   IPI01012720   IPI00965777   IPI00914953   IPI00966011   
Protein Interaction databases
DIP (DOE-UCLA)Q12849
IntAct (EBI)Q12849
FunCoupENSG00000132463
BioGRIDGRSF1
STRING (EMBL)GRSF1
ZODIACGRSF1
Ontologies - Pathways
QuickGOQ12849
Ontology : AmiGORNA binding  mRNA binding  cytoplasm  mitochondrion  mRNA polyadenylation  tRNA processing  anterior/posterior pattern specification  morphogenesis of embryonic epithelium  ribonucleoprotein granule  mitochondrial nucleoid  
Ontology : EGO-EBIRNA binding  mRNA binding  cytoplasm  mitochondrion  mRNA polyadenylation  tRNA processing  anterior/posterior pattern specification  morphogenesis of embryonic epithelium  ribonucleoprotein granule  mitochondrial nucleoid  
NDEx NetworkGRSF1
Atlas of Cancer Signalling NetworkGRSF1
Wikipedia pathwaysGRSF1
Orthology - Evolution
OrthoDB2926
GeneTree (enSembl)ENSG00000132463
Phylogenetic Trees/Animal Genes : TreeFamGRSF1
HOVERGENQ12849
HOGENOMQ12849
Homologs : HomoloGeneGRSF1
Homology/Alignments : Family Browser (UCSC)GRSF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRSF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRSF1
dbVarGRSF1
ClinVarGRSF1
1000_GenomesGRSF1 
Exome Variant ServerGRSF1
ExAC (Exome Aggregation Consortium)GRSF1 (select the gene name)
Genetic variants : HAPMAP2926
Genomic Variants (DGV)GRSF1 [DGVbeta]
DECIPHERGRSF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRSF1 
Mutations
ICGC Data PortalGRSF1 
TCGA Data PortalGRSF1 
Broad Tumor PortalGRSF1
OASIS PortalGRSF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRSF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRSF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch GRSF1
DgiDB (Drug Gene Interaction Database)GRSF1
DoCM (Curated mutations)GRSF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRSF1 (select a term)
intoGenGRSF1
Cancer3DGRSF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604851   
Orphanet
MedgenGRSF1
Genetic Testing Registry GRSF1
NextProtQ12849 [Medical]
TSGene2926
GENETestsGRSF1
Target ValidationGRSF1
Huge Navigator GRSF1 [HugePedia]
snp3D : Map Gene to Disease2926
BioCentury BCIQGRSF1
ClinGenGRSF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2926
Chemical/Pharm GKB GenePA29003
Clinical trialGRSF1
Miscellaneous
canSAR (ICR)GRSF1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRSF1
EVEXGRSF1
GoPubMedGRSF1
iHOPGRSF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:31 CEST 2017

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