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GRSF1 (G-rich RNA sequence binding factor 1)

Identity

Alias (NCBI)-
HGNC (Hugo) GRSF1
LocusID (NCBI) 2926
Atlas_Id 64059
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70815783 and ends at 70839890 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCK (4q13.3) / GRSF1 (4q13.3)GRSF1 (4q13.3) / CIAO1 (2q11.2)GRSF1 (4q13.3) / COL3A1 (2q32.2)
GRSF1 (4q13.3) / ZSWIM6 (5q12.1)GRTP1 (13q34) / GRSF1 (4q13.3)IVNS1ABP (1q25.3) / GRSF1 (4q13.3)
UNC50 (2q11.2) / GRSF1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GRSF1   4610
Cards
Entrez_Gene (NCBI)GRSF1    G-rich RNA sequence binding factor 1
Aliases
GeneCards (Weizmann)GRSF1
Ensembl hg19 (Hinxton)ENSG00000132463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132463 [Gene_View]  ENSG00000132463 [Sequence]  chr4:70815783-70839890 [Contig_View]  GRSF1 [Vega]
ICGC DataPortalENSG00000132463
TCGA cBioPortalGRSF1
AceView (NCBI)GRSF1
Genatlas (Paris)GRSF1
SOURCE (Princeton)GRSF1
Genetics Home Reference (NIH)GRSF1
Genomic and cartography
GoldenPath hg38 (UCSC)GRSF1  -     chr4:70815783-70839890 -  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRSF1  -     4q13.3   [Description]    (hg19-Feb_2009)
GoldenPathGRSF1 - 4q13.3 [CytoView hg19]  GRSF1 - 4q13.3 [CytoView hg38]
ImmunoBaseENSG00000132463
Genome Data Viewer NCBIGRSF1 [Mapview hg19]  
OMIM604851   
Gene and transcription
Genbank (Entrez)AI151431 AK023187 AK055499 AK056891 AK090755
RefSeq transcript (Entrez)NM_001098477 NM_002092
Consensus coding sequences : CCDS (NCBI)GRSF1
Gene ExpressionGRSF1 [ NCBI-GEO ]   GRSF1 [ EBI - ARRAY_EXPRESS ]   GRSF1 [ SEEK ]   GRSF1 [ MEM ]
Gene Expression Viewer (FireBrowse)GRSF1 [ Firebrowse - Broad ]
GenevisibleExpression of GRSF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2926
GTEX Portal (Tissue expression)GRSF1
Human Protein AtlasENSG00000132463-GRSF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12849   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12849  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12849
PhosPhoSitePlusQ12849
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)GRSF-1_RRM2    GRSF1    GRSF1_RRM1    GRSF1_RRM3    Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)GRSF1
PDB (RSDB)2LMI    4QU6    4QU7   
PDB Europe2LMI    4QU6    4QU7   
PDB (PDBSum)2LMI    4QU6    4QU7   
PDB (IMB)2LMI    4QU6    4QU7   
Structural Biology KnowledgeBase2LMI    4QU6    4QU7   
SCOP (Structural Classification of Proteins)2LMI    4QU6    4QU7   
CATH (Classification of proteins structures)2LMI    4QU6    4QU7   
SuperfamilyQ12849
AlphaFold pdb e-kbQ12849   
Human Protein Atlas [tissue]ENSG00000132463-GRSF1 [tissue]
HPRD07276
Protein Interaction databases
DIP (DOE-UCLA)Q12849
IntAct (EBI)Q12849
BioGRIDGRSF1
STRING (EMBL)GRSF1
ZODIACGRSF1
Ontologies - Pathways
QuickGOQ12849
Ontology : AmiGOpositive regulation of mitochondrial RNA catabolic process  RNA binding  RNA binding  RNA binding  mRNA binding  protein binding  nucleoplasm  cytoplasm  mitochondrion  mRNA polyadenylation  tRNA processing  anterior/posterior pattern specification  morphogenesis of embryonic epithelium  ribonucleoprotein granule  mitochondrial nucleoid  regulation of RNA splicing  ribonucleoprotein complex  
Ontology : EGO-EBIpositive regulation of mitochondrial RNA catabolic process  RNA binding  RNA binding  RNA binding  mRNA binding  protein binding  nucleoplasm  cytoplasm  mitochondrion  mRNA polyadenylation  tRNA processing  anterior/posterior pattern specification  morphogenesis of embryonic epithelium  ribonucleoprotein granule  mitochondrial nucleoid  regulation of RNA splicing  ribonucleoprotein complex  
NDEx NetworkGRSF1
Atlas of Cancer Signalling NetworkGRSF1
Wikipedia pathwaysGRSF1
Orthology - Evolution
OrthoDB2926
GeneTree (enSembl)ENSG00000132463
Phylogenetic Trees/Animal Genes : TreeFamGRSF1
Homologs : HomoloGeneGRSF1
Homology/Alignments : Family Browser (UCSC)GRSF1
Gene fusions - Rearrangements
Fusion : QuiverGRSF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRSF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRSF1
dbVarGRSF1
ClinVarGRSF1
MonarchGRSF1
1000_GenomesGRSF1 
Exome Variant ServerGRSF1
GNOMAD BrowserENSG00000132463
Varsome BrowserGRSF1
ACMGGRSF1 variants
VarityQ12849
Genomic Variants (DGV)GRSF1 [DGVbeta]
DECIPHERGRSF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRSF1 
Mutations
ICGC Data PortalGRSF1 
TCGA Data PortalGRSF1 
Broad Tumor PortalGRSF1
OASIS PortalGRSF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRSF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGRSF1
Mutations and Diseases : HGMDGRSF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGRSF1
DgiDB (Drug Gene Interaction Database)GRSF1
DoCM (Curated mutations)GRSF1
CIViC (Clinical Interpretations of Variants in Cancer)GRSF1
Cancer3DGRSF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604851   
Orphanet
DisGeNETGRSF1
MedgenGRSF1
Genetic Testing Registry GRSF1
NextProtQ12849 [Medical]
GENETestsGRSF1
Target ValidationGRSF1
Huge Navigator GRSF1 [HugePedia]
ClinGenGRSF1
Clinical trials, drugs, therapy
MyCancerGenomeGRSF1
Protein Interactions : CTDGRSF1
Pharm GKB GenePA29003
PharosQ12849
Clinical trialGRSF1
Miscellaneous
canSAR (ICR)GRSF1
HarmonizomeGRSF1
DataMed IndexGRSF1
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGRSF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:52:09 CEST 2021

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