Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GRTP1 (growth hormone regulated TBC protein 1)

Identity

Alias_symbol (synonym)FLJ22474
TBC1D6
Other alias
HGNC (Hugo) GRTP1
LocusID (NCBI) 79774
Atlas_Id 56121
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113324843 and ends at 113364148 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDH1 (16q22.1) / GRTP1 (13q34)GRTP1 (13q34) / COL4A2 (13q34)GRTP1 (13q34) / GRSF1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRTP1   20310
Cards
Entrez_Gene (NCBI)GRTP1  79774  growth hormone regulated TBC protein 1
AliasesTBC1D6
GeneCards (Weizmann)GRTP1
Ensembl hg19 (Hinxton)ENSG00000139835 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139835 [Gene_View]  chr13:113324843-113364148 [Contig_View]  GRTP1 [Vega]
ICGC DataPortalENSG00000139835
TCGA cBioPortalGRTP1
AceView (NCBI)GRTP1
Genatlas (Paris)GRTP1
WikiGenes79774
SOURCE (Princeton)GRTP1
Genetics Home Reference (NIH)GRTP1
Genomic and cartography
GoldenPath hg38 (UCSC)GRTP1  -     chr13:113324843-113364148 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRTP1  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblGRTP1 - 13q34 [CytoView hg19]  GRTP1 - 13q34 [CytoView hg38]
Mapping of homologs : NCBIGRTP1 [Mapview hg19]  GRTP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB449887 AK026127 AK300897 AK309959 AW243250
RefSeq transcript (Entrez)NM_001286732 NM_001286733 NM_024719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRTP1
Cluster EST : UnigeneHs.745043 [ NCBI ]
CGAP (NCI)Hs.745043
Alternative Splicing GalleryENSG00000139835
Gene ExpressionGRTP1 [ NCBI-GEO ]   GRTP1 [ EBI - ARRAY_EXPRESS ]   GRTP1 [ SEEK ]   GRTP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GRTP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79774
GTEX Portal (Tissue expression)GRTP1
Human Protein AtlasENSG00000139835-GRTP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TC63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TC63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TC63
Splice isoforms : SwissVarQ5TC63
PhosPhoSitePlusQ5TC63
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)GRTP1
DMDM Disease mutations79774
Blocks (Seattle)GRTP1
SuperfamilyQ5TC63
Human Protein Atlas [tissue]ENSG00000139835-GRTP1 [tissue]
Peptide AtlasQ5TC63
HPRD17080
IPIIPI00791131   IPI00003052   
Protein Interaction databases
DIP (DOE-UCLA)Q5TC63
IntAct (EBI)Q5TC63
FunCoupENSG00000139835
BioGRIDGRTP1
STRING (EMBL)GRTP1
ZODIACGRTP1
Ontologies - Pathways
QuickGOQ5TC63
Ontology : AmiGOGTPase activator activity  intracellular  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular  intracellular protein transport  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  activation of GTPase activity  
NDEx NetworkGRTP1
Atlas of Cancer Signalling NetworkGRTP1
Wikipedia pathwaysGRTP1
Orthology - Evolution
OrthoDB79774
GeneTree (enSembl)ENSG00000139835
Phylogenetic Trees/Animal Genes : TreeFamGRTP1
HOVERGENQ5TC63
HOGENOMQ5TC63
Homologs : HomoloGeneGRTP1
Homology/Alignments : Family Browser (UCSC)GRTP1
Gene fusions - Rearrangements
Tumor Fusion PortalGRTP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRTP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRTP1
dbVarGRTP1
ClinVarGRTP1
1000_GenomesGRTP1 
Exome Variant ServerGRTP1
ExAC (Exome Aggregation Consortium)ENSG00000139835
GNOMAD BrowserENSG00000139835
Genetic variants : HAPMAP79774
Genomic Variants (DGV)GRTP1 [DGVbeta]
DECIPHERGRTP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRTP1 
Mutations
ICGC Data PortalGRTP1 
TCGA Data PortalGRTP1 
Broad Tumor PortalGRTP1
OASIS PortalGRTP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRTP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRTP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRTP1
DgiDB (Drug Gene Interaction Database)GRTP1
DoCM (Curated mutations)GRTP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRTP1 (select a term)
intoGenGRTP1
Cancer3DGRTP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGRTP1
MedgenGRTP1
Genetic Testing Registry GRTP1
NextProtQ5TC63 [Medical]
TSGene79774
GENETestsGRTP1
Target ValidationGRTP1
Huge Navigator GRTP1 [HugePedia]
snp3D : Map Gene to Disease79774
BioCentury BCIQGRTP1
ClinGenGRTP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79774
Chemical/Pharm GKB GenePA134908043
Clinical trialGRTP1
Miscellaneous
canSAR (ICR)GRTP1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRTP1
EVEXGRTP1
GoPubMedGRTP1
iHOPGRTP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:15:25 CET 2017

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