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GRTP1 (growth hormone regulated TBC protein 1)

Identity

Alias (NCBI)TBC1D6
HGNC (Hugo) GRTP1
HGNC Alias symbFLJ22474
TBC1D6
LocusID (NCBI) 79774
Atlas_Id 56121
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113324163 and ends at 113364130 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDH1 (16q22.1) / GRTP1 (13q34)GRTP1 (13q34) / COL4A2 (13q34)GRTP1 (13q34) / GRSF1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GRTP1   20310
Cards
Entrez_Gene (NCBI)GRTP1    growth hormone regulated TBC protein 1
AliasesTBC1D6
GeneCards (Weizmann)GRTP1
Ensembl hg19 (Hinxton)ENSG00000139835 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139835 [Gene_View]  ENSG00000139835 [Sequence]  chr13:113324163-113364130 [Contig_View]  GRTP1 [Vega]
ICGC DataPortalENSG00000139835
TCGA cBioPortalGRTP1
AceView (NCBI)GRTP1
Genatlas (Paris)GRTP1
SOURCE (Princeton)GRTP1
Genetics Home Reference (NIH)GRTP1
Genomic and cartography
GoldenPath hg38 (UCSC)GRTP1  -     chr13:113324163-113364130 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRTP1  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathGRTP1 - 13q34 [CytoView hg19]  GRTP1 - 13q34 [CytoView hg38]
ImmunoBaseENSG00000139835
Genome Data Viewer NCBIGRTP1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB449887 AK026127 AK300897 AK309959 AW243250
RefSeq transcript (Entrez)NM_001286732 NM_001286733 NM_024719
Consensus coding sequences : CCDS (NCBI)GRTP1
Gene ExpressionGRTP1 [ NCBI-GEO ]   GRTP1 [ EBI - ARRAY_EXPRESS ]   GRTP1 [ SEEK ]   GRTP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GRTP1 [ Firebrowse - Broad ]
GenevisibleExpression of GRTP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79774
GTEX Portal (Tissue expression)GRTP1
Human Protein AtlasENSG00000139835-GRTP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TC63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TC63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TC63
PhosPhoSitePlusQ5TC63
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom    Rab-GTPase_TBC_sf   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
Conserved Domain (NCBI)GRTP1
SuperfamilyQ5TC63
AlphaFold pdb e-kbQ5TC63   
Human Protein Atlas [tissue]ENSG00000139835-GRTP1 [tissue]
HPRD17080
Protein Interaction databases
DIP (DOE-UCLA)Q5TC63
IntAct (EBI)Q5TC63
BioGRIDGRTP1
STRING (EMBL)GRTP1
ZODIACGRTP1
Ontologies - Pathways
QuickGOQ5TC63
Ontology : AmiGOGTPase activator activity  intracellular protein transport  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  intracellular protein transport  activation of GTPase activity  
NDEx NetworkGRTP1
Atlas of Cancer Signalling NetworkGRTP1
Wikipedia pathwaysGRTP1
Orthology - Evolution
OrthoDB79774
GeneTree (enSembl)ENSG00000139835
Phylogenetic Trees/Animal Genes : TreeFamGRTP1
Homologs : HomoloGeneGRTP1
Homology/Alignments : Family Browser (UCSC)GRTP1
Gene fusions - Rearrangements
Fusion : QuiverGRTP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRTP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRTP1
dbVarGRTP1
ClinVarGRTP1
MonarchGRTP1
1000_GenomesGRTP1 
Exome Variant ServerGRTP1
GNOMAD BrowserENSG00000139835
Varsome BrowserGRTP1
ACMGGRTP1 variants
VarityQ5TC63
Genomic Variants (DGV)GRTP1 [DGVbeta]
DECIPHERGRTP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRTP1 
Mutations
ICGC Data PortalGRTP1 
TCGA Data PortalGRTP1 
Broad Tumor PortalGRTP1
OASIS PortalGRTP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRTP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGRTP1
Mutations and Diseases : HGMDGRTP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGRTP1
DgiDB (Drug Gene Interaction Database)GRTP1
DoCM (Curated mutations)GRTP1
CIViC (Clinical Interpretations of Variants in Cancer)GRTP1
Cancer3DGRTP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGRTP1
MedgenGRTP1
Genetic Testing Registry GRTP1
NextProtQ5TC63 [Medical]
GENETestsGRTP1
Target ValidationGRTP1
Huge Navigator GRTP1 [HugePedia]
ClinGenGRTP1
Clinical trials, drugs, therapy
MyCancerGenomeGRTP1
Protein Interactions : CTDGRTP1
Pharm GKB GenePA134908043
PharosQ5TC63
Clinical trialGRTP1
Miscellaneous
canSAR (ICR)GRTP1
HarmonizomeGRTP1
DataMed IndexGRTP1
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGRTP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:11:35 CEST 2021

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