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GRWD1 (glutamate rich WD repeat containing 1)

Identity

Other aliasCDW4
GRWD
RRB1
WDR28
HGNC (Hugo) GRWD1
LocusID (NCBI) 83743
Atlas_Id 57095
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48445994 and ends at 48453901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRWD1   21270
8/TH>Cards
Entrez_Gene (NCBI)GRWD1  83743  glutamate rich WD repeat containing 1
AliasesCDW4; GRWD; RRB1; WDR28
GeneCards (Weizmann)GRWD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:48445994-48453901 [Contig_View]  GRWD1 [Vega]
TCGA cBioPortalGRWD1
AceView (NCBI)GRWD1
Genatlas (Paris)GRWD1
WikiGenes83743
SOURCE (Princeton)GRWD1
Genetics Home Reference (NIH)GRWD1
Genomic and cartography
GoldenPath hg38 (UCSC)GRWD1  -     chr19:48445994-48453901 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRWD1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblGRWD1 - 19q13.33 [CytoView hg19]  GRWD1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIGRWD1 [Mapview hg19]  GRWD1 [Mapview hg38]
OMIM610597   
Gene and transcription
Genbank (Entrez)AF337808 AK074676 AK131055 AK300225 AK315625
RefSeq transcript (Entrez)NM_031485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRWD1
Cluster EST : UnigeneHs.400625 [ NCBI ]
CGAP (NCI)Hs.400625
Gene ExpressionGRWD1 [ NCBI-GEO ]   GRWD1 [ EBI - ARRAY_EXPRESS ]   GRWD1 [ SEEK ]   GRWD1 [ MEM ]
Gene Expression Viewer (FireBrowse)GRWD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83743
GTEX Portal (Tissue expression)GRWD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ67
Splice isoforms : SwissVarQ9BQ67
PhosPhoSitePlusQ9BQ67
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    Histone-bd_RBBP4_N    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)CAF1C_H4-bd (PF12265)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12265    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)GRWD1
DMDM Disease mutations83743
Blocks (Seattle)GRWD1
SuperfamilyQ9BQ67
Peptide AtlasQ9BQ67
IPIIPI00027831   IPI00909965   IPI00847896   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ67
IntAct (EBI)Q9BQ67
BioGRIDGRWD1
STRING (EMBL)GRWD1
ZODIACGRWD1
Ontologies - Pathways
QuickGOQ9BQ67
Ontology : AmiGOchromatin binding  DNA replication origin binding  RNA binding  protein binding  nucleus  chromosome  nucleolus  cytosol  DNA replication  nucleosome assembly  nucleosome assembly  nucleosome disassembly  histone binding  protein complex  
Ontology : EGO-EBIchromatin binding  DNA replication origin binding  RNA binding  protein binding  nucleus  chromosome  nucleolus  cytosol  DNA replication  nucleosome assembly  nucleosome assembly  nucleosome disassembly  histone binding  protein complex  
NDEx NetworkGRWD1
Atlas of Cancer Signalling NetworkGRWD1
Wikipedia pathwaysGRWD1
Orthology - Evolution
OrthoDB83743
Phylogenetic Trees/Animal Genes : TreeFamGRWD1
HOVERGENQ9BQ67
HOGENOMQ9BQ67
Homologs : HomoloGeneGRWD1
Homology/Alignments : Family Browser (UCSC)GRWD1
Gene fusions - Rearrangements
Tumor Fusion PortalGRWD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRWD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRWD1
dbVarGRWD1
ClinVarGRWD1
1000_GenomesGRWD1 
Exome Variant ServerGRWD1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP83743
Genomic Variants (DGV)GRWD1 [DGVbeta]
DECIPHERGRWD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRWD1 
Mutations
ICGC Data PortalGRWD1 
TCGA Data PortalGRWD1 
Broad Tumor PortalGRWD1
OASIS PortalGRWD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRWD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRWD1
BioMutasearch GRWD1
DgiDB (Drug Gene Interaction Database)GRWD1
DoCM (Curated mutations)GRWD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRWD1 (select a term)
intoGenGRWD1
Cancer3DGRWD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610597   
Orphanet
DisGeNETGRWD1
MedgenGRWD1
Genetic Testing Registry GRWD1
NextProtQ9BQ67 [Medical]
TSGene83743
GENETestsGRWD1
Target ValidationGRWD1
Huge Navigator GRWD1 [HugePedia]
snp3D : Map Gene to Disease83743
BioCentury BCIQGRWD1
ClinGenGRWD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83743
Chemical/Pharm GKB GenePA134897548
Clinical trialGRWD1
Miscellaneous
canSAR (ICR)GRWD1 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRWD1
EVEXGRWD1
GoPubMedGRWD1
iHOPGRWD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:15:25 CET 2017

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