Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSC (goosecoid homeobox)

Identity

Other aliasSAMS
HGNC (Hugo) GSC
LocusID (NCBI) 145258
Atlas_Id 46257
Location 14q32.13  [Link to chromosome band 14q32]
Location_base_pair Starts at 95234560 and ends at 95236499 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSC   4612
Cards
Entrez_Gene (NCBI)GSC  145258  goosecoid homeobox
AliasesSAMS
GeneCards (Weizmann)GSC
Ensembl hg19 (Hinxton)ENSG00000133937 [Gene_View]  chr14:95234560-95236499 [Contig_View]  GSC [Vega]
Ensembl hg38 (Hinxton)ENSG00000133937 [Gene_View]  chr14:95234560-95236499 [Contig_View]  GSC [Vega]
ICGC DataPortalENSG00000133937
TCGA cBioPortalGSC
AceView (NCBI)GSC
Genatlas (Paris)GSC
WikiGenes145258
SOURCE (Princeton)GSC
Genetics Home Reference (NIH)GSC
Genomic and cartography
GoldenPath hg19 (UCSC)GSC  -     chr14:95234560-95236499 -  14q32.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GSC  -     14q32.13   [Description]    (hg38-Dec_2013)
EnsemblGSC - 14q32.13 [CytoView hg19]  GSC - 14q32.13 [CytoView hg38]
Mapping of homologs : NCBIGSC [Mapview hg19]  GSC [Mapview hg38]
OMIM138890   602471   
Gene and transcription
Genbank (Entrez)AY177407 BC063580
RefSeq transcript (Entrez)NM_173849
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_034111 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)GSC
Cluster EST : UnigeneHs.440438 [ NCBI ]
CGAP (NCI)Hs.440438
Alternative Splicing GalleryENSG00000133937
Gene ExpressionGSC [ NCBI-GEO ]   GSC [ EBI - ARRAY_EXPRESS ]   GSC [ SEEK ]   GSC [ MEM ]
Gene Expression Viewer (FireBrowse)GSC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145258
GTEX Portal (Tissue expression)GSC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56915   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56915  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56915
Splice isoforms : SwissVarP56915
PhosPhoSitePlusP56915
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)GSC
DMDM Disease mutations145258
Blocks (Seattle)GSC
PDB (SRS)2DMU   
PDB (PDBSum)2DMU   
PDB (IMB)2DMU   
PDB (RSDB)2DMU   
Structural Biology KnowledgeBase2DMU   
SCOP (Structural Classification of Proteins)2DMU   
CATH (Classification of proteins structures)2DMU   
SuperfamilyP56915
Human Protein AtlasENSG00000133937
Peptide AtlasP56915
HPRD15928
IPIIPI00011923   
Protein Interaction databases
DIP (DOE-UCLA)P56915
IntAct (EBI)P56915
FunCoupENSG00000133937
BioGRIDGSC
STRING (EMBL)GSC
ZODIACGSC
Ontologies - Pathways
QuickGOP56915
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor binding  RNA polymerase II repressing transcription factor binding  nucleus  transcription factor complex  gastrulation  neural crest cell fate specification  dorsal/ventral neural tube patterning  signal transduction involved in regulation of gene expression  negative regulation of Wnt signaling pathway  forebrain development  middle ear morphogenesis  sequence-specific DNA binding  muscle organ morphogenesis  embryonic skeletal system morphogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor binding  RNA polymerase II repressing transcription factor binding  nucleus  transcription factor complex  gastrulation  neural crest cell fate specification  dorsal/ventral neural tube patterning  signal transduction involved in regulation of gene expression  negative regulation of Wnt signaling pathway  forebrain development  middle ear morphogenesis  sequence-specific DNA binding  muscle organ morphogenesis  embryonic skeletal system morphogenesis  
NDEx NetworkGSC
Atlas of Cancer Signalling NetworkGSC
Wikipedia pathwaysGSC
Orthology - Evolution
OrthoDB145258
GeneTree (enSembl)ENSG00000133937
Phylogenetic Trees/Animal Genes : TreeFamGSC
HOVERGENP56915
HOGENOMP56915
Homologs : HomoloGeneGSC
Homology/Alignments : Family Browser (UCSC)GSC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSC
dbVarGSC
ClinVarGSC
1000_GenomesGSC 
Exome Variant ServerGSC
ExAC (Exome Aggregation Consortium)GSC (select the gene name)
Genetic variants : HAPMAP145258
Genomic Variants (DGV)GSC [DGVbeta]
DECIPHER (Syndromes)14:95234560-95236499  ENSG00000133937
CONAN: Copy Number AnalysisGSC 
Mutations
ICGC Data PortalGSC 
TCGA Data PortalGSC 
Broad Tumor PortalGSC
OASIS PortalGSC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSC
DgiDB (Drug Gene Interaction Database)GSC
DoCM (Curated mutations)GSC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSC (select a term)
intoGenGSC
Cancer3DGSC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138890    602471   
Orphanet22690   
MedgenGSC
Genetic Testing Registry GSC
NextProtP56915 [Medical]
TSGene145258
GENETestsGSC
Huge Navigator GSC [HugePedia]
snp3D : Map Gene to Disease145258
BioCentury BCIQGSC
ClinGenGSC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145258
Chemical/Pharm GKB GenePA29004
Clinical trialGSC
Miscellaneous
canSAR (ICR)GSC (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSC
EVEXGSC
GoPubMedGSC
iHOPGSC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:16 CET 2017

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