Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSC2 (goosecoid homeobox 2)

Identity

Alias_namesGSCL
goosecoid-like
Other alias
HGNC (Hugo) GSC2
LocusID (NCBI) 2928
Atlas_Id 64071
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 19148991 and ends at 19150283 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSC2   4613
Cards
Entrez_Gene (NCBI)GSC2  2928  goosecoid homeobox 2
AliasesGSCL
GeneCards (Weizmann)GSC2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:19148991-19150283 [Contig_View]  GSC2 [Vega]
TCGA cBioPortalGSC2
AceView (NCBI)GSC2
Genatlas (Paris)GSC2
WikiGenes2928
SOURCE (Princeton)GSC2
Genetics Home Reference (NIH)GSC2
Genomic and cartography
GoldenPath hg38 (UCSC)GSC2  -     chr22:19148991-19150283 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSC2  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblGSC2 - 22q11.21 [CytoView hg19]  GSC2 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIGSC2 [Mapview hg19]  GSC2 [Mapview hg38]
OMIM601845   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_005315
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSC2
Cluster EST : UnigeneHs.534318 [ NCBI ]
CGAP (NCI)Hs.534318
Gene ExpressionGSC2 [ NCBI-GEO ]   GSC2 [ EBI - ARRAY_EXPRESS ]   GSC2 [ SEEK ]   GSC2 [ MEM ]
Gene Expression Viewer (FireBrowse)GSC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2928
GTEX Portal (Tissue expression)GSC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15499   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15499  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15499
Splice isoforms : SwissVarO15499
PhosPhoSitePlusO15499
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)GSC2
DMDM Disease mutations2928
Blocks (Seattle)GSC2
SuperfamilyO15499
Peptide AtlasO15499
HPRD03506
IPIIPI00006760   
Protein Interaction databases
DIP (DOE-UCLA)O15499
IntAct (EBI)O15499
BioGRIDGSC2
STRING (EMBL)GSC2
ZODIACGSC2
Ontologies - Pathways
QuickGOO15499
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  anatomical structure morphogenesis  sequence-specific DNA binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  anatomical structure morphogenesis  sequence-specific DNA binding  
NDEx NetworkGSC2
Atlas of Cancer Signalling NetworkGSC2
Wikipedia pathwaysGSC2
Orthology - Evolution
OrthoDB2928
Phylogenetic Trees/Animal Genes : TreeFamGSC2
HOVERGENO15499
HOGENOMO15499
Homologs : HomoloGeneGSC2
Homology/Alignments : Family Browser (UCSC)GSC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSC2
dbVarGSC2
ClinVarGSC2
1000_GenomesGSC2 
Exome Variant ServerGSC2
ExAC (Exome Aggregation Consortium)GSC2 (select the gene name)
Genetic variants : HAPMAP2928
Genomic Variants (DGV)GSC2 [DGVbeta]
DECIPHERGSC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSC2 
Mutations
ICGC Data PortalGSC2 
TCGA Data PortalGSC2 
Broad Tumor PortalGSC2
OASIS PortalGSC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSC2
DgiDB (Drug Gene Interaction Database)GSC2
DoCM (Curated mutations)GSC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSC2 (select a term)
intoGenGSC2
Cancer3DGSC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601845   
Orphanet
MedgenGSC2
Genetic Testing Registry GSC2
NextProtO15499 [Medical]
TSGene2928
GENETestsGSC2
Target ValidationGSC2
Huge Navigator GSC2 [HugePedia]
snp3D : Map Gene to Disease2928
BioCentury BCIQGSC2
ClinGenGSC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2928
Chemical/Pharm GKB GenePA162390265
Clinical trialGSC2
Miscellaneous
canSAR (ICR)GSC2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSC2
EVEXGSC2
GoPubMedGSC2
iHOPGSC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:59 CEST 2017

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