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GSE1 (Gse1 coiled-coil protein)

Identity

Alias_namesKIAA0182
KIAA0182
Gse1 coiled-coil protein homolog (mouse)
Other aliasCRHSP24
HGNC (Hugo) GSE1
LocusID (NCBI) 23199
Atlas_Id 54348
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 85611423 and ends at 85676206 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ERBB2 (17q12) / GSE1 (16q24.1)GSE1 (16q24.1) / HSD17B2 (16q23.3)GSE1 (16q24.1) / KIAA0513 (16q24.1)
GSE1 (16q24.1) / METTL23 (17q25.1)GSE1 (16q24.1) / NACAP1 (8q22.3)GSE1 (16q24.1) / NOTCH3 (19p13.12)
GSE1 (16q24.1) / TPM4 (19p13.12)GSE1 (16q24.1) / USP10 (16q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)GSE1   28979
Cards
Entrez_Gene (NCBI)GSE1  23199  Gse1 coiled-coil protein
AliasesCRHSP24; KIAA0182
GeneCards (Weizmann)GSE1
Ensembl hg19 (Hinxton)ENSG00000131149 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131149 [Gene_View]  chr16:85611423-85676206 [Contig_View]  GSE1 [Vega]
ICGC DataPortalENSG00000131149
TCGA cBioPortalGSE1
AceView (NCBI)GSE1
Genatlas (Paris)GSE1
WikiGenes23199
SOURCE (Princeton)GSE1
Genetics Home Reference (NIH)GSE1
Genomic and cartography
GoldenPath hg38 (UCSC)GSE1  -     chr16:85611423-85676206 +  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSE1  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblGSE1 - 16q24.1 [CytoView hg19]  GSE1 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIGSE1 [Mapview hg19]  GSE1 [Mapview hg38]
OMIM616886   
Gene and transcription
Genbank (Entrez)AK127344 AK308612 AW500000 BC000753 BC009854
RefSeq transcript (Entrez)NM_001134473 NM_001278184 NM_014615
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSE1
Cluster EST : UnigeneHs.461647 [ NCBI ]
CGAP (NCI)Hs.461647
Alternative Splicing GalleryENSG00000131149
Gene ExpressionGSE1 [ NCBI-GEO ]   GSE1 [ EBI - ARRAY_EXPRESS ]   GSE1 [ SEEK ]   GSE1 [ MEM ]
Gene Expression Viewer (FireBrowse)GSE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23199
GTEX Portal (Tissue expression)GSE1
Human Protein AtlasENSG00000131149-GSE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14687   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14687  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14687
Splice isoforms : SwissVarQ14687
PhosPhoSitePlusQ14687
Domains : Interpro (EBI)GSE-like   
Domain families : Pfam (Sanger)DUF3736 (PF12540)   
Domain families : Pfam (NCBI)pfam12540   
Conserved Domain (NCBI)GSE1
DMDM Disease mutations23199
Blocks (Seattle)GSE1
SuperfamilyQ14687
Human Protein Atlas [tissue]ENSG00000131149-GSE1 [tissue]
Peptide AtlasQ14687
HPRD11066
IPIIPI00215963   IPI00807714   IPI00807501   IPI00893790   IPI00477936   IPI00893893   IPI00893879   
Protein Interaction databases
DIP (DOE-UCLA)Q14687
IntAct (EBI)Q14687
FunCoupENSG00000131149
BioGRIDGSE1
STRING (EMBL)GSE1
ZODIACGSE1
Ontologies - Pathways
QuickGOQ14687
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGSE1
Atlas of Cancer Signalling NetworkGSE1
Wikipedia pathwaysGSE1
Orthology - Evolution
OrthoDB23199
GeneTree (enSembl)ENSG00000131149
Phylogenetic Trees/Animal Genes : TreeFamGSE1
HOVERGENQ14687
HOGENOMQ14687
Homologs : HomoloGeneGSE1
Homology/Alignments : Family Browser (UCSC)GSE1
Gene fusions - Rearrangements
Fusion : MitelmanGSE1/HSD17B2 [16q24.1/16q23.3]  
Fusion : MitelmanGSE1/KIAA0513 [16q24.1/16q24.1]  [t(16;16)(q24;q24)]  
Fusion : MitelmanGSE1/METTL23 [16q24.1/17q25.1]  [t(16;17)(q24;q25)]  
Fusion : MitelmanGSE1/NACAP1 [16q24.1/8q22.3]  [t(8;16)(q22;q24)]  
Fusion : MitelmanGSE1/NOTCH3 [16q24.1/19p13.12]  [t(16;19)(q24;p13)]  
Fusion : MitelmanGSE1/TPM4 [16q24.1/19p13.12]  [t(16;19)(q24;p13)]  
Fusion : MitelmanGSE1/USP10 [16q24.1/16q24.1]  [t(16;16)(q24;q24)]  
Tumor Fusion PortalGSE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSE1
dbVarGSE1
ClinVarGSE1
1000_GenomesGSE1 
Exome Variant ServerGSE1
ExAC (Exome Aggregation Consortium)ENSG00000131149
GNOMAD BrowserENSG00000131149
Genetic variants : HAPMAP23199
Genomic Variants (DGV)GSE1 [DGVbeta]
DECIPHERGSE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSE1 
Mutations
ICGC Data PortalGSE1 
TCGA Data PortalGSE1 
Broad Tumor PortalGSE1
OASIS PortalGSE1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGSE1
BioMutasearch GSE1
DgiDB (Drug Gene Interaction Database)GSE1
DoCM (Curated mutations)GSE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSE1 (select a term)
intoGenGSE1
Cancer3DGSE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616886   
Orphanet
DisGeNETGSE1
MedgenGSE1
Genetic Testing Registry GSE1
NextProtQ14687 [Medical]
TSGene23199
GENETestsGSE1
Target ValidationGSE1
Huge Navigator GSE1 [HugePedia]
snp3D : Map Gene to Disease23199
BioCentury BCIQGSE1
ClinGenGSE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23199
Chemical/Pharm GKB GenePA143485512
Clinical trialGSE1
Miscellaneous
canSAR (ICR)GSE1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSE1
EVEXGSE1
GoPubMedGSE1
iHOPGSE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:15:26 CET 2017

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