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GSEC (G-quadruplex forming sequence containing lncRNA)

Identity

Alias_namesST3GAL4-AS1
ST3GAL4 antisense RNA 1 (head to head)
Alias_symbol (synonym)DCPS-AS1
FLJ39051
Other alias
HGNC (Hugo) GSEC
LocusID (NCBI) 399972
Atlas_Id 78862
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 126341716 and ends at 126355587 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSEC   48645
Cards
Entrez_Gene (NCBI)GSEC  399972  G-quadruplex forming sequence containing lncRNA
AliasesDCPS-AS1; ST3GAL4-AS1
GeneCards (Weizmann)GSEC
Ensembl hg19 (Hinxton)ENSG00000280832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280832 [Gene_View]  chr11:126341716-126355587 [Contig_View]  GSEC [Vega]
ICGC DataPortalENSG00000280832
TCGA cBioPortalGSEC
AceView (NCBI)GSEC
Genatlas (Paris)GSEC
WikiGenes399972
SOURCE (Princeton)GSEC
Genetics Home Reference (NIH)GSEC
Genomic and cartography
GoldenPath hg38 (UCSC)GSEC  -     chr11:126341716-126355587 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSEC  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblGSEC - 11q24.2 [CytoView hg19]  GSEC - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIGSEC [Mapview hg19]  GSEC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096370 BF343672 DA746418
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSEC
Cluster EST : UnigeneHs.585206 [ NCBI ]
CGAP (NCI)Hs.585206
Alternative Splicing GalleryENSG00000280832
Gene ExpressionGSEC [ NCBI-GEO ]   GSEC [ EBI - ARRAY_EXPRESS ]   GSEC [ SEEK ]   GSEC [ MEM ]
Gene Expression Viewer (FireBrowse)GSEC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)399972
GTEX Portal (Tissue expression)GSEC
Human Protein AtlasENSG00000280832-GSEC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GSEC
DMDM Disease mutations399972
Blocks (Seattle)GSEC
Human Protein Atlas [tissue]ENSG00000280832-GSEC [tissue]
Protein Interaction databases
FunCoupENSG00000280832
BioGRIDGSEC
STRING (EMBL)GSEC
ZODIACGSEC
Ontologies - Pathways
Huge Navigator GSEC [HugePedia]
snp3D : Map Gene to Disease399972
BioCentury BCIQGSEC
ClinGenGSEC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399972
Clinical trialGSEC
Miscellaneous
canSAR (ICR)GSEC (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSEC
EVEXGSEC
GoPubMedGSEC
iHOPGSEC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:23:30 CET 2017

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