Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSG1 (germ cell associated 1)

Identity

Alias_symbol (synonym)MGC3146
Other alias-
HGNC (Hugo) GSG1
LocusID (NCBI) 83445
Atlas_Id 64072
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 13083537 and ends at 13103696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC440934 (2q36.1) / GSG1 (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSG1   19716
Cards
Entrez_Gene (NCBI)GSG1  83445  germ cell associated 1
Aliases
GeneCards (Weizmann)GSG1
Ensembl hg19 (Hinxton)ENSG00000111305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111305 [Gene_View]  chr12:13083537-13103696 [Contig_View]  GSG1 [Vega]
ICGC DataPortalENSG00000111305
TCGA cBioPortalGSG1
AceView (NCBI)GSG1
Genatlas (Paris)GSG1
WikiGenes83445
SOURCE (Princeton)GSG1
Genetics Home Reference (NIH)GSG1
Genomic and cartography
GoldenPath hg38 (UCSC)GSG1  -     chr12:13083537-13103696 -  12p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSG1  -     12p13.1   [Description]    (hg19-Feb_2009)
EnsemblGSG1 - 12p13.1 [CytoView hg19]  GSG1 - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBIGSG1 [Mapview hg19]  GSG1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593019 AB593020 AK027894 AK058045 AK075288
RefSeq transcript (Entrez)NM_001080554 NM_001080555 NM_001206842 NM_001206843 NM_001206845 NM_031289 NM_153823
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSG1
Cluster EST : UnigeneHs.240053 [ NCBI ]
CGAP (NCI)Hs.240053
Alternative Splicing GalleryENSG00000111305
Gene ExpressionGSG1 [ NCBI-GEO ]   GSG1 [ EBI - ARRAY_EXPRESS ]   GSG1 [ SEEK ]   GSG1 [ MEM ]
Gene Expression Viewer (FireBrowse)GSG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83445
GTEX Portal (Tissue expression)GSG1
Human Protein AtlasENSG00000111305-GSG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2KHT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2KHT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2KHT4
Splice isoforms : SwissVarQ2KHT4
PhosPhoSitePlusQ2KHT4
Domains : Interpro (EBI)GSG-1   
Domain families : Pfam (Sanger)GSG-1 (PF07803)   
Domain families : Pfam (NCBI)pfam07803   
Conserved Domain (NCBI)GSG1
DMDM Disease mutations83445
Blocks (Seattle)GSG1
SuperfamilyQ2KHT4
Human Protein Atlas [tissue]ENSG00000111305-GSG1 [tissue]
Peptide AtlasQ2KHT4
HPRD11015
IPIIPI00890759   IPI00306166   IPI00853323   IPI00795675   IPI00852871   IPI00796780   IPI00395641   IPI01012562   IPI00794602   IPI01010294   IPI00792849   IPI01009490   
Protein Interaction databases
DIP (DOE-UCLA)Q2KHT4
IntAct (EBI)Q2KHT4
FunCoupENSG00000111305
BioGRIDGSG1
STRING (EMBL)GSG1
ZODIACGSG1
Ontologies - Pathways
QuickGOQ2KHT4
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  integral component of membrane  RNA polymerase binding  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  integral component of membrane  RNA polymerase binding  
NDEx NetworkGSG1
Atlas of Cancer Signalling NetworkGSG1
Wikipedia pathwaysGSG1
Orthology - Evolution
OrthoDB83445
GeneTree (enSembl)ENSG00000111305
Phylogenetic Trees/Animal Genes : TreeFamGSG1
HOVERGENQ2KHT4
HOGENOMQ2KHT4
Homologs : HomoloGeneGSG1
Homology/Alignments : Family Browser (UCSC)GSG1
Gene fusions - Rearrangements
Tumor Fusion PortalGSG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSG1
dbVarGSG1
ClinVarGSG1
1000_GenomesGSG1 
Exome Variant ServerGSG1
ExAC (Exome Aggregation Consortium)ENSG00000111305
GNOMAD BrowserENSG00000111305
Genetic variants : HAPMAP83445
Genomic Variants (DGV)GSG1 [DGVbeta]
DECIPHERGSG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSG1 
Mutations
ICGC Data PortalGSG1 
TCGA Data PortalGSG1 
Broad Tumor PortalGSG1
OASIS PortalGSG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSG1
DgiDB (Drug Gene Interaction Database)GSG1
DoCM (Curated mutations)GSG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSG1 (select a term)
intoGenGSG1
Cancer3DGSG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGSG1
MedgenGSG1
Genetic Testing Registry GSG1
NextProtQ2KHT4 [Medical]
TSGene83445
GENETestsGSG1
Target ValidationGSG1
Huge Navigator GSG1 [HugePedia]
snp3D : Map Gene to Disease83445
BioCentury BCIQGSG1
ClinGenGSG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83445
Chemical/Pharm GKB GenePA134868096
Clinical trialGSG1
Miscellaneous
canSAR (ICR)GSG1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSG1
EVEXGSG1
GoPubMedGSG1
iHOPGSG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:26:13 CET 2017

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