Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSG1L (GSG1-like)

Identity

Alias_symbol (synonym)MGC18079
PRO19651
KTSR5831
Other alias
HGNC (Hugo) GSG1L
LocusID (NCBI) 146395
Atlas_Id 64073
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 27798850 and ends at 28074830 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LPCAT3 (12p13.31) / GSG1L (16p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSG1L   28283
Cards
Entrez_Gene (NCBI)GSG1L  146395  GSG1-like
AliasesPRO19651
GeneCards (Weizmann)GSG1L
Ensembl hg19 (Hinxton)ENSG00000169181 [Gene_View]  chr16:27798850-28074830 [Contig_View]  GSG1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000169181 [Gene_View]  chr16:27798850-28074830 [Contig_View]  GSG1L [Vega]
ICGC DataPortalENSG00000169181
TCGA cBioPortalGSG1L
AceView (NCBI)GSG1L
Genatlas (Paris)GSG1L
WikiGenes146395
SOURCE (Princeton)GSG1L
Genetics Home Reference (NIH)GSG1L
Genomic and cartography
GoldenPath hg19 (UCSC)GSG1L  -     chr16:27798850-28074830 -  16p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GSG1L  -     16p12.1   [Description]    (hg38-Dec_2013)
EnsemblGSG1L - 16p12.1 [CytoView hg19]  GSG1L - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBIGSG1L [Mapview hg19]  GSG1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI418246 AK128775 AY302134 AY358206 BC016460
RefSeq transcript (Entrez)NM_001109763 NM_144675
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)GSG1L
Cluster EST : UnigeneHs.91910 [ NCBI ]
CGAP (NCI)Hs.91910
Alternative Splicing GalleryENSG00000169181
Gene ExpressionGSG1L [ NCBI-GEO ]   GSG1L [ EBI - ARRAY_EXPRESS ]   GSG1L [ SEEK ]   GSG1L [ MEM ]
Gene Expression Viewer (FireBrowse)GSG1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146395
GTEX Portal (Tissue expression)GSG1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXU4
Splice isoforms : SwissVarQ6UXU4
PhosPhoSitePlusQ6UXU4
Domains : Interpro (EBI)GSG-1   
Domain families : Pfam (Sanger)GSG-1 (PF07803)   
Domain families : Pfam (NCBI)pfam07803   
Conserved Domain (NCBI)GSG1L
DMDM Disease mutations146395
Blocks (Seattle)GSG1L
SuperfamilyQ6UXU4
Human Protein AtlasENSG00000169181
Peptide AtlasQ6UXU4
HPRD14464
IPIIPI00152159   IPI00432726   IPI00892819   IPI00894216   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXU4
IntAct (EBI)Q6UXU4
FunCoupENSG00000169181
BioGRIDGSG1L
STRING (EMBL)GSG1L
ZODIACGSG1L
Ontologies - Pathways
QuickGOQ6UXU4
Ontology : AmiGOprotein binding  plasma membrane  integral component of membrane  cell junction  asymmetric synapse  regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of membrane  cell junction  asymmetric synapse  regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity  
NDEx NetworkGSG1L
Atlas of Cancer Signalling NetworkGSG1L
Wikipedia pathwaysGSG1L
Orthology - Evolution
OrthoDB146395
GeneTree (enSembl)ENSG00000169181
Phylogenetic Trees/Animal Genes : TreeFamGSG1L
HOVERGENQ6UXU4
HOGENOMQ6UXU4
Homologs : HomoloGeneGSG1L
Homology/Alignments : Family Browser (UCSC)GSG1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSG1L
dbVarGSG1L
ClinVarGSG1L
1000_GenomesGSG1L 
Exome Variant ServerGSG1L
ExAC (Exome Aggregation Consortium)GSG1L (select the gene name)
Genetic variants : HAPMAP146395
Genomic Variants (DGV)GSG1L [DGVbeta]
DECIPHER (Syndromes)16:27798850-28074830  ENSG00000169181
CONAN: Copy Number AnalysisGSG1L 
Mutations
ICGC Data PortalGSG1L 
TCGA Data PortalGSG1L 
Broad Tumor PortalGSG1L
OASIS PortalGSG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSG1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSG1L
DgiDB (Drug Gene Interaction Database)GSG1L
DoCM (Curated mutations)GSG1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSG1L (select a term)
intoGenGSG1L
Cancer3DGSG1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGSG1L
Genetic Testing Registry GSG1L
NextProtQ6UXU4 [Medical]
TSGene146395
GENETestsGSG1L
Huge Navigator GSG1L [HugePedia]
snp3D : Map Gene to Disease146395
BioCentury BCIQGSG1L
ClinGenGSG1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146395
Chemical/Pharm GKB GenePA145148734
Clinical trialGSG1L
Miscellaneous
canSAR (ICR)GSG1L (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSG1L
EVEXGSG1L
GoPubMedGSG1L
iHOPGSG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:03 CET 2017

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