Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSG1L2 (GSG1 like 2)

Identity

Other alias-
HGNC (Hugo) GSG1L2
LocusID (NCBI) 644070
Atlas_Id 77746
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 9802386 and ends at 9822071 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSG1L2   51826
Cards
Entrez_Gene (NCBI)GSG1L2  644070  GSG1 like 2
Aliases
GeneCards (Weizmann)GSG1L2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:9802386-9822071 [Contig_View]  GSG1L2 [Vega]
TCGA cBioPortalGSG1L2
AceView (NCBI)GSG1L2
Genatlas (Paris)GSG1L2
WikiGenes644070
SOURCE (Princeton)GSG1L2
Genetics Home Reference (NIH)GSG1L2
Genomic and cartography
GoldenPath hg38 (UCSC)GSG1L2  -     chr17:9802386-9822071 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSG1L2  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblGSG1L2 - 17p13.1 [CytoView hg19]  GSG1L2 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIGSG1L2 [Mapview hg19]  GSG1L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001310219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSG1L2
Gene ExpressionGSG1L2 [ NCBI-GEO ]   GSG1L2 [ EBI - ARRAY_EXPRESS ]   GSG1L2 [ SEEK ]   GSG1L2 [ MEM ]
Gene Expression Viewer (FireBrowse)GSG1L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644070
GTEX Portal (Tissue expression)GSG1L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUP6
Splice isoforms : SwissVarA8MUP6
PhosPhoSitePlusA8MUP6
Domains : Interpro (EBI)GSG-1   
Domain families : Pfam (Sanger)GSG-1 (PF07803)   
Domain families : Pfam (NCBI)pfam07803   
Conserved Domain (NCBI)GSG1L2
DMDM Disease mutations644070
Blocks (Seattle)GSG1L2
SuperfamilyA8MUP6
Peptide AtlasA8MUP6
IPIIPI00787576   
Protein Interaction databases
DIP (DOE-UCLA)A8MUP6
IntAct (EBI)A8MUP6
BioGRIDGSG1L2
STRING (EMBL)GSG1L2
ZODIACGSG1L2
Ontologies - Pathways
QuickGOA8MUP6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkGSG1L2
Atlas of Cancer Signalling NetworkGSG1L2
Wikipedia pathwaysGSG1L2
Orthology - Evolution
OrthoDB644070
Phylogenetic Trees/Animal Genes : TreeFamGSG1L2
HOVERGENA8MUP6
HOGENOMA8MUP6
Homologs : HomoloGeneGSG1L2
Homology/Alignments : Family Browser (UCSC)GSG1L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSG1L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSG1L2
dbVarGSG1L2
ClinVarGSG1L2
1000_GenomesGSG1L2 
Exome Variant ServerGSG1L2
ExAC (Exome Aggregation Consortium)GSG1L2 (select the gene name)
Genetic variants : HAPMAP644070
Genomic Variants (DGV)GSG1L2 [DGVbeta]
DECIPHERGSG1L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSG1L2 
Mutations
ICGC Data PortalGSG1L2 
TCGA Data PortalGSG1L2 
Broad Tumor PortalGSG1L2
OASIS PortalGSG1L2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGSG1L2
BioMutasearch GSG1L2
DgiDB (Drug Gene Interaction Database)GSG1L2
DoCM (Curated mutations)GSG1L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSG1L2 (select a term)
intoGenGSG1L2
Cancer3DGSG1L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGSG1L2
Genetic Testing Registry GSG1L2
NextProtA8MUP6 [Medical]
TSGene644070
GENETestsGSG1L2
Target ValidationGSG1L2
Huge Navigator GSG1L2 [HugePedia]
snp3D : Map Gene to Disease644070
BioCentury BCIQGSG1L2
ClinGenGSG1L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644070
Clinical trialGSG1L2
Miscellaneous
canSAR (ICR)GSG1L2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSG1L2
EVEXGSG1L2
GoPubMedGSG1L2
iHOPGSG1L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:36 CEST 2017

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