Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSN-AS1 (GSN antisense RNA 1)

Identity

Alias_namesC9orf31
chromosome 9 open reading frame 31
GSN antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)MOST2
Other alias
HGNC (Hugo) GSN-AS1
LocusID (NCBI) 57000
Atlas_Id 64075
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 124043046 and ends at 124047808 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSN-AS1   23372
Cards
Entrez_Gene (NCBI)GSN-AS1  57000  GSN antisense RNA 1
AliasesC9orf31; MOST2
GeneCards (Weizmann)GSN-AS1
Ensembl hg19 (Hinxton)ENSG00000235865 [Gene_View]  chr9:124043046-124047808 [Contig_View]  GSN-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000235865 [Gene_View]  chr9:124043046-124047808 [Contig_View]  GSN-AS1 [Vega]
ICGC DataPortalENSG00000235865
TCGA cBioPortalGSN-AS1
AceView (NCBI)GSN-AS1
Genatlas (Paris)GSN-AS1
WikiGenes57000
SOURCE (Princeton)GSN-AS1
Genetics Home Reference (NIH)GSN-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)GSN-AS1  -     chr9:124043046-124047808 -  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GSN-AS1  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblGSN-AS1 - 9q33.2 [CytoView hg19]  GSN-AS1 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIGSN-AS1 [Mapview hg19]  GSN-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF220263 HG502395
RefSeq transcript (Entrez)NM_020250
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)GSN-AS1
Cluster EST : UnigeneHs.522373 [ NCBI ]
CGAP (NCI)Hs.522373
Alternative Splicing GalleryENSG00000235865
Gene ExpressionGSN-AS1 [ NCBI-GEO ]   GSN-AS1 [ EBI - ARRAY_EXPRESS ]   GSN-AS1 [ SEEK ]   GSN-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GSN-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57000
GTEX Portal (Tissue expression)GSN-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRJ2
Splice isoforms : SwissVarQ9NRJ2
PhosPhoSitePlusQ9NRJ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GSN-AS1
DMDM Disease mutations57000
Blocks (Seattle)GSN-AS1
SuperfamilyQ9NRJ2
Human Protein AtlasENSG00000235865
Peptide AtlasQ9NRJ2
IPIIPI00299850   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRJ2
IntAct (EBI)Q9NRJ2
FunCoupENSG00000235865
BioGRIDGSN-AS1
STRING (EMBL)GSN-AS1
ZODIACGSN-AS1
Ontologies - Pathways
QuickGOQ9NRJ2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGSN-AS1
Atlas of Cancer Signalling NetworkGSN-AS1
Wikipedia pathwaysGSN-AS1
Orthology - Evolution
OrthoDB57000
GeneTree (enSembl)ENSG00000235865
Phylogenetic Trees/Animal Genes : TreeFamGSN-AS1
HOVERGENQ9NRJ2
HOGENOMQ9NRJ2
Homologs : HomoloGeneGSN-AS1
Homology/Alignments : Family Browser (UCSC)GSN-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSN-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSN-AS1
dbVarGSN-AS1
ClinVarGSN-AS1
1000_GenomesGSN-AS1 
Exome Variant ServerGSN-AS1
ExAC (Exome Aggregation Consortium)GSN-AS1 (select the gene name)
Genetic variants : HAPMAP57000
Genomic Variants (DGV)GSN-AS1 [DGVbeta]
DECIPHER (Syndromes)9:124043046-124047808  ENSG00000235865
CONAN: Copy Number AnalysisGSN-AS1 
Mutations
ICGC Data PortalGSN-AS1 
TCGA Data PortalGSN-AS1 
Broad Tumor PortalGSN-AS1
OASIS PortalGSN-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGSN-AS1
BioMutasearch GSN-AS1
DgiDB (Drug Gene Interaction Database)GSN-AS1
DoCM (Curated mutations)GSN-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSN-AS1 (select a term)
intoGenGSN-AS1
Cancer3DGSN-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGSN-AS1
Genetic Testing Registry GSN-AS1
NextProtQ9NRJ2 [Medical]
TSGene57000
GENETestsGSN-AS1
Huge Navigator GSN-AS1 [HugePedia]
snp3D : Map Gene to Disease57000
BioCentury BCIQGSN-AS1
ClinGenGSN-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57000
Chemical/Pharm GKB GenePA142672312
Clinical trialGSN-AS1
Miscellaneous
canSAR (ICR)GSN-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSN-AS1
EVEXGSN-AS1
GoPubMedGSN-AS1
iHOPGSN-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:03 CET 2017

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