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GSPT2 (G1 to S phase transition 2)

Identity

Alias_symbol (synonym)eRF3b
FLJ10441
Other aliasERF3B
GST2
HGNC (Hugo) GSPT2
LocusID (NCBI) 23708
Atlas_Id 46632
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 51743385 and ends at 51746230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SBSN (19q13.12) / GSPT2 (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSPT2   4622
Cards
Entrez_Gene (NCBI)GSPT2  23708  G1 to S phase transition 2
AliasesERF3B; GST2
GeneCards (Weizmann)GSPT2
Ensembl hg19 (Hinxton)ENSG00000189369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189369 [Gene_View]  chrX:51743385-51746230 [Contig_View]  GSPT2 [Vega]
ICGC DataPortalENSG00000189369
TCGA cBioPortalGSPT2
AceView (NCBI)GSPT2
Genatlas (Paris)GSPT2
WikiGenes23708
SOURCE (Princeton)GSPT2
Genetics Home Reference (NIH)GSPT2
Genomic and cartography
GoldenPath hg38 (UCSC)GSPT2  -     chrX:51743385-51746230 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSPT2  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblGSPT2 - Xp11.22 [CytoView hg19]  GSPT2 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIGSPT2 [Mapview hg19]  GSPT2 [Mapview hg38]
OMIM300418   
Gene and transcription
Genbank (Entrez)AI191874 AJ251548 AK001303 AK023155 AK225671
RefSeq transcript (Entrez)NM_018094
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSPT2
Cluster EST : UnigeneHs.59523 [ NCBI ]
CGAP (NCI)Hs.59523
Alternative Splicing GalleryENSG00000189369
Gene ExpressionGSPT2 [ NCBI-GEO ]   GSPT2 [ EBI - ARRAY_EXPRESS ]   GSPT2 [ SEEK ]   GSPT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GSPT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23708
GTEX Portal (Tissue expression)GSPT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYD1
Splice isoforms : SwissVarQ8IYD1
PhosPhoSitePlusQ8IYD1
Domaine pattern : Prosite (Expaxy)G_TR_1 (PS00301)    G_TR_2 (PS51722)   
Domains : Interpro (EBI)Ataxin-2_C    EFTu-like_2    G_TR_CS    P-loop_NTPase    TF_GTP-bd_dom    Transl_B-barrel    Transl_elong_EF1A/Init_IF2_C    Transl_elong_EFTu/EF1A_C   
Domain families : Pfam (Sanger)GTP_EFTU_D2 (PF03144)    GTP_EFTU_D3 (PF03143)    PAM2 (PF07145)   
Domain families : Pfam (NCBI)pfam03144    pfam03143    pfam07145   
Conserved Domain (NCBI)GSPT2
DMDM Disease mutations23708
Blocks (Seattle)GSPT2
PDB (SRS)3KUJ   
PDB (PDBSum)3KUJ   
PDB (IMB)3KUJ   
PDB (RSDB)3KUJ   
Structural Biology KnowledgeBase3KUJ   
SCOP (Structural Classification of Proteins)3KUJ   
CATH (Classification of proteins structures)3KUJ   
SuperfamilyQ8IYD1
Human Protein AtlasENSG00000189369
Peptide AtlasQ8IYD1
HPRD02334
IPIIPI00642097   IPI01014849   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYD1
IntAct (EBI)Q8IYD1
FunCoupENSG00000189369
BioGRIDGSPT2
STRING (EMBL)GSPT2
ZODIACGSPT2
Ontologies - Pathways
QuickGOQ8IYD1
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translational termination  RNA binding  translation release factor activity  GTPase activity  protein binding  GTP binding  cytosol  translational termination  cell cycle  translation release factor complex  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translational termination  RNA binding  translation release factor activity  GTPase activity  protein binding  GTP binding  cytosol  translational termination  cell cycle  translation release factor complex  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkGSPT2
Atlas of Cancer Signalling NetworkGSPT2
Wikipedia pathwaysGSPT2
Orthology - Evolution
OrthoDB23708
GeneTree (enSembl)ENSG00000189369
Phylogenetic Trees/Animal Genes : TreeFamGSPT2
HOVERGENQ8IYD1
HOGENOMQ8IYD1
Homologs : HomoloGeneGSPT2
Homology/Alignments : Family Browser (UCSC)GSPT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSPT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSPT2
dbVarGSPT2
ClinVarGSPT2
1000_GenomesGSPT2 
Exome Variant ServerGSPT2
ExAC (Exome Aggregation Consortium)GSPT2 (select the gene name)
Genetic variants : HAPMAP23708
Genomic Variants (DGV)GSPT2 [DGVbeta]
DECIPHERGSPT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSPT2 
Mutations
ICGC Data PortalGSPT2 
TCGA Data PortalGSPT2 
Broad Tumor PortalGSPT2
OASIS PortalGSPT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSPT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSPT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GSPT2
DgiDB (Drug Gene Interaction Database)GSPT2
DoCM (Curated mutations)GSPT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSPT2 (select a term)
intoGenGSPT2
Cancer3DGSPT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300418   
Orphanet
MedgenGSPT2
Genetic Testing Registry GSPT2
NextProtQ8IYD1 [Medical]
TSGene23708
GENETestsGSPT2
Huge Navigator GSPT2 [HugePedia]
snp3D : Map Gene to Disease23708
BioCentury BCIQGSPT2
ClinGenGSPT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23708
Chemical/Pharm GKB GenePA29013
Clinical trialGSPT2
Miscellaneous
canSAR (ICR)GSPT2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSPT2
EVEXGSPT2
GoPubMedGSPT2
iHOPGSPT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:18:05 CEST 2017

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