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GSTCD (glutathione S-transferase C-terminal domain containing)

Identity

Alias_namesGlutathione S-transferase
Alias_symbol (synonym)FLJ13273
Other alias-
HGNC (Hugo) GSTCD
LocusID (NCBI) 79807
Atlas_Id 40595
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 105710813 and ends at 105847725 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAP1GDS1 (4q23) / GSTCD (4q24)RAP1GDS1 4q23 / GSTCD 4q24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSTCD   25806
Cards
Entrez_Gene (NCBI)GSTCD  79807  glutathione S-transferase C-terminal domain containing
Aliases
GeneCards (Weizmann)GSTCD
Ensembl hg19 (Hinxton)ENSG00000138780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138780 [Gene_View]  chr4:105710813-105847725 [Contig_View]  GSTCD [Vega]
ICGC DataPortalENSG00000138780
TCGA cBioPortalGSTCD
AceView (NCBI)GSTCD
Genatlas (Paris)GSTCD
WikiGenes79807
SOURCE (Princeton)GSTCD
Genetics Home Reference (NIH)GSTCD
Genomic and cartography
GoldenPath hg38 (UCSC)GSTCD  -     chr4:105710813-105847725 +  4q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSTCD  -     4q24   [Description]    (hg19-Feb_2009)
EnsemblGSTCD - 4q24 [CytoView hg19]  GSTCD - 4q24 [CytoView hg38]
Mapping of homologs : NCBIGSTCD [Mapview hg19]  GSTCD [Mapview hg38]
OMIM615912   
Gene and transcription
Genbank (Entrez)AK023335 AK225563 AK292355 AK303547 BC032942
RefSeq transcript (Entrez)NM_001031720 NM_024751
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSTCD
Cluster EST : UnigeneHs.161429 [ NCBI ]
CGAP (NCI)Hs.161429
Alternative Splicing GalleryENSG00000138780
Gene ExpressionGSTCD [ NCBI-GEO ]   GSTCD [ EBI - ARRAY_EXPRESS ]   GSTCD [ SEEK ]   GSTCD [ MEM ]
Gene Expression Viewer (FireBrowse)GSTCD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79807
GTEX Portal (Tissue expression)GSTCD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEC7
Splice isoforms : SwissVarQ8NEC7
PhosPhoSitePlusQ8NEC7
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Methyltranfer_dom    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_32 (PF13679)   
Domain families : Pfam (NCBI)pfam13679   
Conserved Domain (NCBI)GSTCD
DMDM Disease mutations79807
Blocks (Seattle)GSTCD
SuperfamilyQ8NEC7
Human Protein AtlasENSG00000138780
Peptide AtlasQ8NEC7
HPRD07823
IPIIPI00478068   IPI00796339   IPI00966693   IPI00968140   IPI00965782   IPI00966166   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEC7
IntAct (EBI)Q8NEC7
FunCoupENSG00000138780
BioGRIDGSTCD
STRING (EMBL)GSTCD
ZODIACGSTCD
Ontologies - Pathways
QuickGOQ8NEC7
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  biological_process  extracellular exosome  
NDEx NetworkGSTCD
Atlas of Cancer Signalling NetworkGSTCD
Wikipedia pathwaysGSTCD
Orthology - Evolution
OrthoDB79807
GeneTree (enSembl)ENSG00000138780
Phylogenetic Trees/Animal Genes : TreeFamGSTCD
HOVERGENQ8NEC7
HOGENOMQ8NEC7
Homologs : HomoloGeneGSTCD
Homology/Alignments : Family Browser (UCSC)GSTCD
Gene fusions - Rearrangements
Fusion: TCGARAP1GDS1 4q23 GSTCD 4q24 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSTCD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSTCD
dbVarGSTCD
ClinVarGSTCD
1000_GenomesGSTCD 
Exome Variant ServerGSTCD
ExAC (Exome Aggregation Consortium)GSTCD (select the gene name)
Genetic variants : HAPMAP79807
Genomic Variants (DGV)GSTCD [DGVbeta]
DECIPHERGSTCD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSTCD 
Mutations
ICGC Data PortalGSTCD 
TCGA Data PortalGSTCD 
Broad Tumor PortalGSTCD
OASIS PortalGSTCD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSTCD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSTCD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSTCD
DgiDB (Drug Gene Interaction Database)GSTCD
DoCM (Curated mutations)GSTCD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSTCD (select a term)
intoGenGSTCD
Cancer3DGSTCD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615912   
Orphanet
MedgenGSTCD
Genetic Testing Registry GSTCD
NextProtQ8NEC7 [Medical]
TSGene79807
GENETestsGSTCD
Target ValidationGSTCD
Huge Navigator GSTCD [HugePedia]
snp3D : Map Gene to Disease79807
BioCentury BCIQGSTCD
ClinGenGSTCD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79807
Chemical/Pharm GKB GenePA144596427
Clinical trialGSTCD
Miscellaneous
canSAR (ICR)GSTCD (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSTCD
EVEXGSTCD
GoPubMedGSTCD
iHOPGSTCD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:54:51 CEST 2017

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