Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GSTM2 (glutathione S-transferase mu 2)

Identity

Alias (NCBI)GST4
GSTM
GSTM2-2
GTHMUS
HGNC (Hugo) GSTM2
HGNC Alias symbGST4
HGNC Previous nameglutathione S-transferase M2 (muscle)
 glutathione S-transferase mu 2 (muscle)
LocusID (NCBI) 2946
Atlas_Id 40769
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109668022 and ends at 109683997 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ALG13 (Xq23) / GSTM2 (1p13.3)EPB41L1 (20q11.23) / GSTM2 (1p13.3)GSTM2 (1p13.3) / EVC2 (4p16.2)
GSTM2 (1p13.3) / RAN (12q24.33)PTRF (17q21.2) / GSTM2 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GSTM2   4634
Cards
Entrez_Gene (NCBI)GSTM2    glutathione S-transferase mu 2
AliasesGST4; GSTM; GSTM2-2; GTHMUS
GeneCards (Weizmann)GSTM2
Ensembl hg19 (Hinxton)ENSG00000213366 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213366 [Gene_View]  ENSG00000213366 [Sequence]  chr1:109668022-109683997 [Contig_View]  GSTM2 [Vega]
ICGC DataPortalENSG00000213366
TCGA cBioPortalGSTM2
AceView (NCBI)GSTM2
Genatlas (Paris)GSTM2
SOURCE (Princeton)GSTM2
Genetics Home Reference (NIH)GSTM2
Genomic and cartography
GoldenPath hg38 (UCSC)GSTM2  -     chr1:109668022-109683997 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSTM2  -     1p13.3   [Description]    (hg19-Feb_2009)
GoldenPathGSTM2 - 1p13.3 [CytoView hg19]  GSTM2 - 1p13.3 [CytoView hg38]
ImmunoBaseENSG00000213366
genome Data Viewer NCBIGSTM2 [Mapview hg19]  
OMIM138380   
Gene and transcription
Genbank (Entrez)AK299482 AK309796 BC017836 BC105038 BC105066
RefSeq transcript (Entrez)NM_000848 NM_001142368
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSTM2
Alternative Splicing GalleryENSG00000213366
Gene ExpressionGSTM2 [ NCBI-GEO ]   GSTM2 [ EBI - ARRAY_EXPRESS ]   GSTM2 [ SEEK ]   GSTM2 [ MEM ]
Gene Expression Viewer (FireBrowse)GSTM2 [ Firebrowse - Broad ]
GenevisibleExpression of GSTM2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2946
GTEX Portal (Tissue expression)GSTM2
Human Protein AtlasENSG00000213366-GSTM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP28161   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP28161  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP28161
Splice isoforms : SwissVarP28161
Catalytic activity : Enzyme2.5.1.18 [ Enzyme-Expasy ]   2.5.1.182.5.1.18 [ IntEnz-EBI ]   2.5.1.18 [ BRENDA ]   2.5.1.18 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusP28161
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Glutathione-S-Trfase_C_sf    Glutathione_S-Trfase    Glutathione_S-Trfase_N    GST_C    GST_mu    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)GST_C (PF00043)    GST_N (PF02798)   
Domain families : Pfam (NCBI)pfam00043    pfam02798   
Conserved Domain (NCBI)GSTM2
Blocks (Seattle)GSTM2
PDB (RSDB)1HNA    1HNB    1HNC    1XW5    1YKC    2AB6    2C4J    2GTU    3GTU    3GUR    5HWL   
PDB Europe1HNA    1HNB    1HNC    1XW5    1YKC    2AB6    2C4J    2GTU    3GTU    3GUR    5HWL   
PDB (PDBSum)1HNA    1HNB    1HNC    1XW5    1YKC    2AB6    2C4J    2GTU    3GTU    3GUR    5HWL   
PDB (IMB)1HNA    1HNB    1HNC    1XW5    1YKC    2AB6    2C4J    2GTU    3GTU    3GUR    5HWL   
Structural Biology KnowledgeBase1HNA    1HNB    1HNC    1XW5    1YKC    2AB6    2C4J    2GTU    3GTU    3GUR    5HWL   
SCOP (Structural Classification of Proteins)1HNA    1HNB    1HNC    1XW5    1YKC    2AB6    2C4J    2GTU    3GTU    3GUR    5HWL   
CATH (Classification of proteins structures)1HNA    1HNB    1HNC    1XW5    1YKC    2AB6    2C4J    2GTU    3GTU    3GUR    5HWL   
SuperfamilyP28161
Human Protein Atlas [tissue]ENSG00000213366-GSTM2 [tissue]
Peptide AtlasP28161
HPRD00710
IPIIPI00219067   IPI00940377   IPI00639805   IPI00645711   IPI00645360   IPI00984060   
Protein Interaction databases
DIP (DOE-UCLA)P28161
IntAct (EBI)P28161
BioGRIDGSTM2
STRING (EMBL)GSTM2
ZODIACGSTM2
Ontologies - Pathways
QuickGOP28161
Ontology : AmiGOglutathione transferase activity  glutathione transferase activity  glutathione peroxidase activity  signaling receptor binding  fatty acid binding  protein binding  cytoplasm  cytosol  cytosol  glutathione metabolic process  glutathione metabolic process  regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion  sarcoplasmic reticulum  nitrobenzene metabolic process  enzyme binding  xenobiotic catabolic process  protein homodimerization activity  glutathione binding  linoleic acid metabolic process  intercellular bridge  hepoxilin biosynthetic process  relaxation of cardiac muscle  negative regulation of ryanodine-sensitive calcium-release channel activity  positive regulation of ryanodine-sensitive calcium-release channel activity  extracellular exosome  cellular detoxification of nitrogen compound  cellular response to caffeine  cellular oxidant detoxification  glutathione derivative biosynthetic process  
Ontology : EGO-EBIglutathione transferase activity  glutathione transferase activity  glutathione peroxidase activity  signaling receptor binding  fatty acid binding  protein binding  cytoplasm  cytosol  cytosol  glutathione metabolic process  glutathione metabolic process  regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion  sarcoplasmic reticulum  nitrobenzene metabolic process  enzyme binding  xenobiotic catabolic process  protein homodimerization activity  glutathione binding  linoleic acid metabolic process  intercellular bridge  hepoxilin biosynthetic process  relaxation of cardiac muscle  negative regulation of ryanodine-sensitive calcium-release channel activity  positive regulation of ryanodine-sensitive calcium-release channel activity  extracellular exosome  cellular detoxification of nitrogen compound  cellular response to caffeine  cellular oxidant detoxification  glutathione derivative biosynthetic process  
Pathways : KEGGGlutathione metabolism    Metabolism of xenobiotics by cytochrome P450    Drug metabolism - cytochrome P450    Chemical carcinogenesis   
NDEx NetworkGSTM2
Atlas of Cancer Signalling NetworkGSTM2
Wikipedia pathwaysGSTM2
Orthology - Evolution
OrthoDB2946
GeneTree (enSembl)ENSG00000213366
Phylogenetic Trees/Animal Genes : TreeFamGSTM2
HOGENOMP28161
Homologs : HomoloGeneGSTM2
Homology/Alignments : Family Browser (UCSC)GSTM2
Gene fusions - Rearrangements
Fusion : QuiverGSTM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSTM2 [hg38]
dbVarGSTM2
ClinVarGSTM2
MonarchGSTM2
1000_GenomesGSTM2 
Exome Variant ServerGSTM2
GNOMAD BrowserENSG00000213366
Varsome BrowserGSTM2
Genomic Variants (DGV)GSTM2 [DGVbeta]
DECIPHERGSTM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSTM2 
Mutations
ICGC Data PortalGSTM2 
TCGA Data PortalGSTM2 
Broad Tumor PortalGSTM2
OASIS PortalGSTM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSTM2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGSTM2
Mutations and Diseases : HGMDGSTM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSTM2
DgiDB (Drug Gene Interaction Database)GSTM2
DoCM (Curated mutations)GSTM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSTM2 (select a term)
intoGenGSTM2
Cancer3DGSTM2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138380   
Orphanet
DisGeNETGSTM2
MedgenGSTM2
Genetic Testing Registry GSTM2
NextProtP28161 [Medical]
GENETestsGSTM2
Target ValidationGSTM2
Huge Navigator GSTM2 [HugePedia]
ClinGenGSTM2
Clinical trials, drugs, therapy
MyCancerGenomeGSTM2
Protein Interactions : CTD
Pharm GKB GenePA29023
PharosP28161
Clinical trialGSTM2
Miscellaneous
canSAR (ICR)GSTM2 (select the gene name)
HarmonizomeGSTM2
DataMed IndexGSTM2
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGSTM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:17:56 CET 2021
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