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GSTM5 (glutathione S-transferase mu 5)

Identity

Alias_namesglutathione S-transferase M5
Other aliasGSTM5-5
GTM5
HGNC (Hugo) GSTM5
LocusID (NCBI) 2949
Atlas_Id 40772
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 110254864 and ends at 110260890 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GSTM5 (1p13.3) / GSTM4 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSTM5   4637
Cards
Entrez_Gene (NCBI)GSTM5  2949  glutathione S-transferase mu 5
AliasesGSTM5-5; GTM5
GeneCards (Weizmann)GSTM5
Ensembl hg19 (Hinxton)ENSG00000134201 [Gene_View]  chr1:110254864-110260890 [Contig_View]  GSTM5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134201 [Gene_View]  chr1:110254864-110260890 [Contig_View]  GSTM5 [Vega]
ICGC DataPortalENSG00000134201
TCGA cBioPortalGSTM5
AceView (NCBI)GSTM5
Genatlas (Paris)GSTM5
WikiGenes2949
SOURCE (Princeton)GSTM5
Genetics Home Reference (NIH)GSTM5
Genomic and cartography
GoldenPath hg19 (UCSC)GSTM5  -     chr1:110254864-110260890 +  1p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GSTM5  -     1p13.3   [Description]    (hg38-Dec_2013)
EnsemblGSTM5 - 1p13.3 [CytoView hg19]  GSTM5 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIGSTM5 [Mapview hg19]  GSTM5 [Mapview hg38]
OMIM138385   
Gene and transcription
Genbank (Entrez)AK125820 AK127250 AK289673 AK315260 BC058881
RefSeq transcript (Entrez)NM_000851
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)GSTM5
Cluster EST : UnigeneHs.75652 [ NCBI ]
CGAP (NCI)Hs.75652
Alternative Splicing GalleryENSG00000134201
Gene ExpressionGSTM5 [ NCBI-GEO ]   GSTM5 [ EBI - ARRAY_EXPRESS ]   GSTM5 [ SEEK ]   GSTM5 [ MEM ]
Gene Expression Viewer (FireBrowse)GSTM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2949
GTEX Portal (Tissue expression)GSTM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46439   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46439  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46439
Splice isoforms : SwissVarP46439
Catalytic activity : Enzyme2.5.1.18 [ Enzyme-Expasy ]   2.5.1.182.5.1.18 [ IntEnz-EBI ]   2.5.1.18 [ BRENDA ]   2.5.1.18 [ KEGG ]   
PhosPhoSitePlusP46439
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Glutathione_S-Trfase_N    GST_C    GST_mu    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)GST_C (PF00043)    GST_N (PF02798)   
Domain families : Pfam (NCBI)pfam00043    pfam02798   
Conserved Domain (NCBI)GSTM5
DMDM Disease mutations2949
Blocks (Seattle)GSTM5
SuperfamilyP46439
Human Protein AtlasENSG00000134201
Peptide AtlasP46439
HPRD00711
IPIIPI00419235   IPI00444582   IPI00642432   
Protein Interaction databases
DIP (DOE-UCLA)P46439
IntAct (EBI)P46439
FunCoupENSG00000134201
BioGRIDGSTM5
STRING (EMBL)GSTM5
ZODIACGSTM5
Ontologies - Pathways
QuickGOP46439
Ontology : AmiGOglutathione transferase activity  glutathione transferase activity  protein binding  cytosol  glutathione metabolic process  glutathione derivative biosynthetic process  
Ontology : EGO-EBIglutathione transferase activity  glutathione transferase activity  protein binding  cytosol  glutathione metabolic process  glutathione derivative biosynthetic process  
Pathways : KEGGGlutathione metabolism    Metabolism of xenobiotics by cytochrome P450    Drug metabolism - cytochrome P450    Chemical carcinogenesis   
NDEx NetworkGSTM5
Atlas of Cancer Signalling NetworkGSTM5
Wikipedia pathwaysGSTM5
Orthology - Evolution
OrthoDB2949
GeneTree (enSembl)ENSG00000134201
Phylogenetic Trees/Animal Genes : TreeFamGSTM5
HOVERGENP46439
HOGENOMP46439
Homologs : HomoloGeneGSTM5
Homology/Alignments : Family Browser (UCSC)GSTM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSTM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSTM5
dbVarGSTM5
ClinVarGSTM5
1000_GenomesGSTM5 
Exome Variant ServerGSTM5
ExAC (Exome Aggregation Consortium)GSTM5 (select the gene name)
Genetic variants : HAPMAP2949
Genomic Variants (DGV)GSTM5 [DGVbeta]
DECIPHER (Syndromes)1:110254864-110260890  ENSG00000134201
CONAN: Copy Number AnalysisGSTM5 
Mutations
ICGC Data PortalGSTM5 
TCGA Data PortalGSTM5 
Broad Tumor PortalGSTM5
OASIS PortalGSTM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSTM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSTM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSTM5
DgiDB (Drug Gene Interaction Database)GSTM5
DoCM (Curated mutations)GSTM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSTM5 (select a term)
intoGenGSTM5
Cancer3DGSTM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138385   
Orphanet
MedgenGSTM5
Genetic Testing Registry GSTM5
NextProtP46439 [Medical]
TSGene2949
GENETestsGSTM5
Huge Navigator GSTM5 [HugePedia]
snp3D : Map Gene to Disease2949
BioCentury BCIQGSTM5
ClinGenGSTM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2949
Chemical/Pharm GKB GenePA29027
Clinical trialGSTM5
Miscellaneous
canSAR (ICR)GSTM5 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSTM5
EVEXGSTM5
GoPubMedGSTM5
iHOPGSTM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:21 CET 2017

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