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GSTT2 (glutathione S-transferase theta 2 (gene/pseudogene))

Identity

Other names-
HGNC (Hugo) GSTT2
LocusID (NCBI) 2953
Atlas_Id 40775
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 24322219 and ends at 24326106 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSTT2   4642
Cards
Entrez_Gene (NCBI)GSTT2  2953  glutathione S-transferase theta 2 (gene/pseudogene)
Aliases
GeneCards (Weizmann)GSTT2
Ensembl hg19 (Hinxton)ENSG00000099984 [Gene_View]  chr22:24322219-24326106 [Contig_View]  GSTT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000099984 [Gene_View]  chr22:24322219-24326106 [Contig_View]  GSTT2 [Vega]
ICGC DataPortalENSG00000099984
TCGA cBioPortalGSTT2
AceView (NCBI)GSTT2
Genatlas (Paris)GSTT2
WikiGenes2953
SOURCE (Princeton)GSTT2
Genomic and cartography
GoldenPath hg19 (UCSC)GSTT2  -     chr22:24322219-24326106 +  22q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GSTT2  -     22q11.23   [Description]    (hg38-Dec_2013)
EnsemblGSTT2 - 22q11.23 [CytoView hg19]  GSTT2 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIGSTT2 [Mapview hg19]  GSTT2 [Mapview hg38]
OMIM600437   
Gene and transcription
Genbank (Entrez)AA682380 AK312043 BC146929 BC146940 BC146943
RefSeq transcript (Entrez)NM_000854 NM_001302670
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NT_187633 NW_004929430
Consensus coding sequences : CCDS (NCBI)GSTT2
Cluster EST : UnigeneHs.656498 [ NCBI ]
CGAP (NCI)Hs.656498
Alternative Splicing GalleryENSG00000099984
Gene ExpressionGSTT2 [ NCBI-GEO ]   GSTT2 [ EBI - ARRAY_EXPRESS ]   GSTT2 [ SEEK ]   GSTT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GSTT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2953
GTEX Portal (Tissue expression)GSTT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG29 (Uniprot)
NextProtP0CG29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG29
Splice isoforms : SwissVarP0CG29 (Swissvar)
Catalytic activity : Enzyme2.5.1.18 [ Enzyme-Expasy ]   2.5.1.182.5.1.18 [ IntEnz-EBI ]   2.5.1.18 [ BRENDA ]   2.5.1.18 [ KEGG ]   
PhosPhoSitePlusP0CG29
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Glutathione_S-Trfase_N    GST_C    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)GST_C (PF00043)    GST_N (PF02798)   
Domain families : Pfam (NCBI)pfam00043    pfam02798   
DMDM Disease mutations2953
Blocks (Seattle)GSTT2
PDB (SRS)4MPF   
PDB (PDBSum)4MPF   
PDB (IMB)4MPF   
PDB (RSDB)4MPF   
Structural Biology KnowledgeBase4MPF   
SCOP (Structural Classification of Proteins)4MPF   
CATH (Classification of proteins structures)4MPF   
SuperfamilyP0CG29
Human Protein AtlasENSG00000099984
Peptide AtlasP0CG29
HPRD02701
IPIIPI00419250   IPI00879420   
Protein Interaction databases
DIP (DOE-UCLA)P0CG29
IntAct (EBI)P0CG29
FunCoupENSG00000099984
BioGRIDGSTT2
STRING (EMBL)GSTT2
ZODIACGSTT2
Ontologies - Pathways
QuickGOP0CG29
Ontology : AmiGOglutathione transferase activity  cytoplasm  glutathione metabolic process  extracellular exosome  
Ontology : EGO-EBIglutathione transferase activity  cytoplasm  glutathione metabolic process  extracellular exosome  
Pathways : KEGGGlutathione metabolism    Metabolism of xenobiotics by cytochrome P450    Drug metabolism - cytochrome P450    Chemical carcinogenesis   
NDEx NetworkGSTT2
Atlas of Cancer Signalling NetworkGSTT2
Wikipedia pathwaysGSTT2
Orthology - Evolution
OrthoDB2953
GeneTree (enSembl)ENSG00000099984
Phylogenetic Trees/Animal Genes : TreeFamGSTT2
Homologs : HomoloGeneGSTT2
Homology/Alignments : Family Browser (UCSC)GSTT2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGSTT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSTT2
dbVarGSTT2
ClinVarGSTT2
1000_GenomesGSTT2 
Exome Variant ServerGSTT2
ExAC (Exome Aggregation Consortium)GSTT2 (select the gene name)
Genetic variants : HAPMAP2953
Genomic Variants (DGV)GSTT2 [DGVbeta]
Mutations
ICGC Data PortalGSTT2 
TCGA Data PortalGSTT2 
Broad Tumor PortalGSTT2
OASIS PortalGSTT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSTT2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSTT2
DgiDB (Drug Gene Interaction Database)GSTT2
DoCM (Curated mutations)GSTT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSTT2 (select a term)
intoGenGSTT2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)22:24322219-24326106  ENSG00000099984
CONAN: Copy Number AnalysisGSTT2 
Mutations and Diseases : HGMDGSTT2
OMIM600437   
MedgenGSTT2
Genetic Testing Registry GSTT2
NextProtP0CG29 [Medical]
TSGene2953
GENETestsGSTT2
Huge Navigator GSTT2 [HugePedia]
snp3D : Map Gene to Disease2953
BioCentury BCIQGSTT2
ClinGenGSTT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2953
Chemical/Pharm GKB GenePA29030
Clinical trialGSTT2
Miscellaneous
canSAR (ICR)GSTT2 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSTT2
EVEXGSTT2
GoPubMedGSTT2
iHOPGSTT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Oct 1 15:54:48 CEST 2016

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