Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GSTT2B (glutathione S-transferase theta 2B (gene/pseudogene))

Identity

Alias_symbol (synonym)GSTT2P
Other alias
HGNC (Hugo) GSTT2B
LocusID (NCBI) 653689
Atlas_Id 64079
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 23957414 and ends at 23961181 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSTT2B   33437
Cards
Entrez_Gene (NCBI)GSTT2B  653689  glutathione S-transferase theta 2B (gene/pseudogene)
AliasesGSTT2P
GeneCards (Weizmann)GSTT2B
Ensembl hg19 (Hinxton)ENSG00000133433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133433 [Gene_View]  chr22:23957414-23961181 [Contig_View]  GSTT2B [Vega]
ICGC DataPortalENSG00000133433
TCGA cBioPortalGSTT2B
AceView (NCBI)GSTT2B
Genatlas (Paris)GSTT2B
WikiGenes653689
SOURCE (Princeton)GSTT2B
Genetics Home Reference (NIH)GSTT2B
Genomic and cartography
GoldenPath hg38 (UCSC)GSTT2B  -     chr22:23957414-23961181 -  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSTT2B  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblGSTT2B - 22q11.23 [CytoView hg19]  GSTT2B - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIGSTT2B [Mapview hg19]  GSTT2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC002415 BC071700 BC146936
RefSeq transcript (Entrez)NM_001080843
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_187633
Consensus coding sequences : CCDS (NCBI)GSTT2B
Cluster EST : UnigeneHs.656498 [ NCBI ]
CGAP (NCI)Hs.656498
Alternative Splicing GalleryENSG00000133433
Gene ExpressionGSTT2B [ NCBI-GEO ]   GSTT2B [ EBI - ARRAY_EXPRESS ]   GSTT2B [ SEEK ]   GSTT2B [ MEM ]
Gene Expression Viewer (FireBrowse)GSTT2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653689
GTEX Portal (Tissue expression)GSTT2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG30
Splice isoforms : SwissVarP0CG30
Catalytic activity : Enzyme2.5.1.18 [ Enzyme-Expasy ]   2.5.1.182.5.1.18 [ IntEnz-EBI ]   2.5.1.18 [ BRENDA ]   2.5.1.18 [ KEGG ]   
PhosPhoSitePlusP0CG30
Domaine pattern : Prosite (Expaxy)GST_CTER (PS50405)    GST_NTER (PS50404)   
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Glutathione_S-Trfase_N    GST_C    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)GST_C (PF00043)    GST_N (PF02798)   
Domain families : Pfam (NCBI)pfam00043    pfam02798   
Conserved Domain (NCBI)GSTT2B
DMDM Disease mutations653689
Blocks (Seattle)GSTT2B
PDB (SRS)1LJR    2LJR    3LJR    4MPG   
PDB (PDBSum)1LJR    2LJR    3LJR    4MPG   
PDB (IMB)1LJR    2LJR    3LJR    4MPG   
PDB (RSDB)1LJR    2LJR    3LJR    4MPG   
Structural Biology KnowledgeBase1LJR    2LJR    3LJR    4MPG   
SCOP (Structural Classification of Proteins)1LJR    2LJR    3LJR    4MPG   
CATH (Classification of proteins structures)1LJR    2LJR    3LJR    4MPG   
SuperfamilyP0CG30
Human Protein AtlasENSG00000133433
Peptide AtlasP0CG30
IPIIPI00956139   
Protein Interaction databases
DIP (DOE-UCLA)P0CG30
IntAct (EBI)P0CG30
FunCoupENSG00000133433
BioGRIDGSTT2B
STRING (EMBL)GSTT2B
ZODIACGSTT2B
Ontologies - Pathways
QuickGOP0CG30
Ontology : AmiGOglutathione transferase activity  glutathione transferase activity  nucleoplasm  cytosol  cytosol  extracellular exosome  glutathione derivative biosynthetic process  
Ontology : EGO-EBIglutathione transferase activity  glutathione transferase activity  nucleoplasm  cytosol  cytosol  extracellular exosome  glutathione derivative biosynthetic process  
Pathways : KEGGGlutathione metabolism    Metabolism of xenobiotics by cytochrome P450    Drug metabolism - cytochrome P450    Chemical carcinogenesis   
NDEx NetworkGSTT2B
Atlas of Cancer Signalling NetworkGSTT2B
Wikipedia pathwaysGSTT2B
Orthology - Evolution
OrthoDB653689
GeneTree (enSembl)ENSG00000133433
Phylogenetic Trees/Animal Genes : TreeFamGSTT2B
HOVERGENP0CG30
HOGENOMP0CG30
Homologs : HomoloGeneGSTT2B
Homology/Alignments : Family Browser (UCSC)GSTT2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSTT2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSTT2B
dbVarGSTT2B
ClinVarGSTT2B
1000_GenomesGSTT2B 
Exome Variant ServerGSTT2B
ExAC (Exome Aggregation Consortium)GSTT2B (select the gene name)
Genetic variants : HAPMAP653689
Genomic Variants (DGV)GSTT2B [DGVbeta]
DECIPHERGSTT2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSTT2B 
Mutations
ICGC Data PortalGSTT2B 
TCGA Data PortalGSTT2B 
Broad Tumor PortalGSTT2B
OASIS PortalGSTT2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSTT2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSTT2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSTT2B
DgiDB (Drug Gene Interaction Database)GSTT2B
DoCM (Curated mutations)GSTT2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSTT2B (select a term)
intoGenGSTT2B
Cancer3DGSTT2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGSTT2B
Genetic Testing Registry GSTT2B
NextProtP0CG30 [Medical]
TSGene653689
GENETestsGSTT2B
Target ValidationGSTT2B
Huge Navigator GSTT2B [HugePedia]
snp3D : Map Gene to Disease653689
BioCentury BCIQGSTT2B
ClinGenGSTT2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653689
Chemical/Pharm GKB GenePA162390358
Clinical trialGSTT2B
Miscellaneous
canSAR (ICR)GSTT2B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSTT2B
EVEXGSTT2B
GoPubMedGSTT2B
iHOPGSTT2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.