Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSX1 (GS homeobox 1)

Identity

Alias (NCBI)GSH1
Gsh-1
HGNC (Hugo) GSX1
HGNC Alias symbGsh-1
HGNC Previous nameGSH1
LocusID (NCBI) 219409
Atlas_Id 64082
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27792483 and ends at 27794768 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GSX1   20374
Cards
Entrez_Gene (NCBI)GSX1    GS homeobox 1
AliasesGSH1; Gsh-1
GeneCards (Weizmann)GSX1
Ensembl hg19 (Hinxton)ENSG00000169840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169840 [Gene_View]  ENSG00000169840 [Sequence]  chr13:27792483-27794768 [Contig_View]  GSX1 [Vega]
ICGC DataPortalENSG00000169840
TCGA cBioPortalGSX1
AceView (NCBI)GSX1
Genatlas (Paris)GSX1
SOURCE (Princeton)GSX1
Genetics Home Reference (NIH)GSX1
Genomic and cartography
GoldenPath hg38 (UCSC)GSX1  -     chr13:27792483-27794768 +  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSX1  -     13q12.2   [Description]    (hg19-Feb_2009)
GoldenPathGSX1 - 13q12.2 [CytoView hg19]  GSX1 - 13q12.2 [CytoView hg38]
ImmunoBaseENSG00000169840
Genome Data Viewer NCBIGSX1 [Mapview hg19]  
OMIM616542   
Gene and transcription
Genbank (Entrez)AB044157
RefSeq transcript (Entrez)NM_145657
Consensus coding sequences : CCDS (NCBI)GSX1
Gene ExpressionGSX1 [ NCBI-GEO ]   GSX1 [ EBI - ARRAY_EXPRESS ]   GSX1 [ SEEK ]   GSX1 [ MEM ]
Gene Expression Viewer (FireBrowse)GSX1 [ Firebrowse - Broad ]
GenevisibleExpression of GSX1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219409
GTEX Portal (Tissue expression)GSX1
Human Protein AtlasENSG00000169840-GSX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4S2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4S2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4S2
PhosPhoSitePlusQ9H4S2
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeodomain (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)GSX1
SuperfamilyQ9H4S2
AlphaFold pdb e-kbQ9H4S2   
Human Protein Atlas [tissue]ENSG00000169840-GSX1 [tissue]
HPRD11016
Protein Interaction databases
DIP (DOE-UCLA)Q9H4S2
IntAct (EBI)Q9H4S2
BioGRIDGSX1
STRING (EMBL)GSX1
ZODIACGSX1
Ontologies - Pathways
QuickGOQ9H4S2
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  central nervous system development  spinal cord association neuron differentiation  hypothalamus development  adenohypophysis development  neuron differentiation  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  neuron fate commitment  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  central nervous system development  spinal cord association neuron differentiation  hypothalamus development  adenohypophysis development  neuron differentiation  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  neuron fate commitment  sequence-specific double-stranded DNA binding  
NDEx NetworkGSX1
Atlas of Cancer Signalling NetworkGSX1
Wikipedia pathwaysGSX1
Orthology - Evolution
OrthoDB219409
GeneTree (enSembl)ENSG00000169840
Phylogenetic Trees/Animal Genes : TreeFamGSX1
Homologs : HomoloGeneGSX1
Homology/Alignments : Family Browser (UCSC)GSX1
Gene fusions - Rearrangements
Fusion : QuiverGSX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSX1
dbVarGSX1
ClinVarGSX1
MonarchGSX1
1000_GenomesGSX1 
Exome Variant ServerGSX1
GNOMAD BrowserENSG00000169840
Varsome BrowserGSX1
ACMGGSX1 variants
VarityQ9H4S2
Genomic Variants (DGV)GSX1 [DGVbeta]
DECIPHERGSX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSX1 
Mutations
ICGC Data PortalGSX1 
TCGA Data PortalGSX1 
Broad Tumor PortalGSX1
OASIS PortalGSX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSX1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGSX1
Mutations and Diseases : HGMDGSX1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGSX1
DgiDB (Drug Gene Interaction Database)GSX1
DoCM (Curated mutations)GSX1
CIViC (Clinical Interpretations of Variants in Cancer)GSX1
Cancer3DGSX1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616542   
Orphanet
DisGeNETGSX1
MedgenGSX1
Genetic Testing Registry GSX1
NextProtQ9H4S2 [Medical]
GENETestsGSX1
Target ValidationGSX1
Huge Navigator GSX1 [HugePedia]
ClinGenGSX1
Clinical trials, drugs, therapy
MyCancerGenomeGSX1
Protein Interactions : CTDGSX1
Pharm GKB GenePA162390373
PharosQ9H4S2
Clinical trialGSX1
Miscellaneous
canSAR (ICR)GSX1
HarmonizomeGSX1
DataMed IndexGSX1
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGSX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:52:15 CEST 2021

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