Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GSX1 (GS homeobox 1)

Identity

Alias_namesGSH1
Alias_symbol (synonym)Gsh-1
Other alias
HGNC (Hugo) GSX1
LocusID (NCBI) 219409
Atlas_Id 64082
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27792643 and ends at 27793952 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GSX1   20374
Cards
Entrez_Gene (NCBI)GSX1  219409  GS homeobox 1
AliasesGSH1; Gsh-1
GeneCards (Weizmann)GSX1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:27792643-27793952 [Contig_View]  GSX1 [Vega]
TCGA cBioPortalGSX1
AceView (NCBI)GSX1
Genatlas (Paris)GSX1
WikiGenes219409
SOURCE (Princeton)GSX1
Genetics Home Reference (NIH)GSX1
Genomic and cartography
GoldenPath hg38 (UCSC)GSX1  -     chr13:27792643-27793952 +  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GSX1  -     13q12.2   [Description]    (hg19-Feb_2009)
EnsemblGSX1 - 13q12.2 [CytoView hg19]  GSX1 - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBIGSX1 [Mapview hg19]  GSX1 [Mapview hg38]
OMIM616542   
Gene and transcription
Genbank (Entrez)AB044157 BC160140
RefSeq transcript (Entrez)NM_145657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GSX1
Cluster EST : UnigeneHs.351785 [ NCBI ]
CGAP (NCI)Hs.351785
Gene ExpressionGSX1 [ NCBI-GEO ]   GSX1 [ EBI - ARRAY_EXPRESS ]   GSX1 [ SEEK ]   GSX1 [ MEM ]
Gene Expression Viewer (FireBrowse)GSX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219409
GTEX Portal (Tissue expression)GSX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4S2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4S2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4S2
Splice isoforms : SwissVarQ9H4S2
PhosPhoSitePlusQ9H4S2
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)GSX1
DMDM Disease mutations219409
Blocks (Seattle)GSX1
SuperfamilyQ9H4S2
Peptide AtlasQ9H4S2
HPRD11016
IPIIPI00028199   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4S2
IntAct (EBI)Q9H4S2
BioGRIDGSX1
STRING (EMBL)GSX1
ZODIACGSX1
Ontologies - Pathways
QuickGOQ9H4S2
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  spinal cord association neuron differentiation  hypothalamus development  adenohypophysis development  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  neuron fate commitment  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  spinal cord association neuron differentiation  hypothalamus development  adenohypophysis development  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  neuron fate commitment  
NDEx NetworkGSX1
Atlas of Cancer Signalling NetworkGSX1
Wikipedia pathwaysGSX1
Orthology - Evolution
OrthoDB219409
Phylogenetic Trees/Animal Genes : TreeFamGSX1
HOVERGENQ9H4S2
HOGENOMQ9H4S2
Homologs : HomoloGeneGSX1
Homology/Alignments : Family Browser (UCSC)GSX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGSX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GSX1
dbVarGSX1
ClinVarGSX1
1000_GenomesGSX1 
Exome Variant ServerGSX1
ExAC (Exome Aggregation Consortium)GSX1 (select the gene name)
Genetic variants : HAPMAP219409
Genomic Variants (DGV)GSX1 [DGVbeta]
DECIPHERGSX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGSX1 
Mutations
ICGC Data PortalGSX1 
TCGA Data PortalGSX1 
Broad Tumor PortalGSX1
OASIS PortalGSX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGSX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGSX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GSX1
DgiDB (Drug Gene Interaction Database)GSX1
DoCM (Curated mutations)GSX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GSX1 (select a term)
intoGenGSX1
Cancer3DGSX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616542   
Orphanet
MedgenGSX1
Genetic Testing Registry GSX1
NextProtQ9H4S2 [Medical]
TSGene219409
GENETestsGSX1
Target ValidationGSX1
Huge Navigator GSX1 [HugePedia]
snp3D : Map Gene to Disease219409
BioCentury BCIQGSX1
ClinGenGSX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219409
Chemical/Pharm GKB GenePA162390373
Clinical trialGSX1
Miscellaneous
canSAR (ICR)GSX1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGSX1
EVEXGSX1
GoPubMedGSX1
iHOPGSX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:01 CEST 2017

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