GTDC1 (glycosyltransferase like domain containing 1)

2012-01-01  

Identity

HGNC
GTDC1
LOCATION
2q22.3
LOCUSID
79712
ALIAS
Hmat-Xa,mat-Xa
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 79712
MIM: 610165
HGNC: 20887
Ensembl: ENSG00000121964

Variants:

dbSNP: 79712
ClinVar: 79712
TCGA: ENSG00000121964
COSMIC: GTDC1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000121964ENST00000241391Q4AE62
ENSG00000121964ENST00000344850Q4AE62
ENSG00000121964ENST00000392867Q4AE62
ENSG00000121964ENST00000392869Q4AE62
ENSG00000121964ENST00000392871Q4AE62
ENSG00000121964ENST00000409214Q4AE62
ENSG00000121964ENST00000409298B8ZZ45
ENSG00000121964ENST00000415569F2Z2V8
ENSG00000121964ENST00000417450C9J2C5
ENSG00000121964ENST00000429978F2Z2V8
ENSG00000121964ENST00000437114C9JIH3
ENSG00000121964ENST00000463875Q4AE62
ENSG00000121964ENST00000542155Q4AE62
ENSG00000121964ENST00000618778Q4AE62

Expression (GTEx)

0
5
10
15
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
198260482009Candidate gene association study of esophageal squamous cell carcinoma in a high-risk region in Iran.18
150685882004Cloning and expression of human GTDC1 gene (glycosyltransferase-like domain containing 1) from human fetal library.5
283657792017Personalized genome sequencing coupled with iPSC technology identifies GTDC1 as a gene involved in neurodevelopmental disorders.4
301006162019Fine-mapping analysis of a chromosome 2 region linked to resistance to Mycobacterium tuberculosis infection in Uganda reveals potential regulatory variants.3
218219512011Remarkable expression in the colon adenocarcinoma of Hmat-Xa, a human mannosyltransferase-like gene, that is homologous to drosophila gene GC15914.1

Citation

Dessen P

GTDC1 (glycosyltransferase like domain containing 1)

Atlas Genet Cytogenet Oncol Haematol. 2012-01-01

Online version: http://atlasgeneticsoncology.org/gene/52578/gtdc1