GTF2A1L (general transcription factor IIA subunit 1 like)

2014-11-01  

Identity

HGNC
GTF2A1L
LOCATION
2p16.3
LOCUSID
11036
ALIAS
ALF
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 11036
MIM: 605358
HGNC: 30727
Ensembl: ENSG00000242441

Variants:

dbSNP: 11036
ClinVar: 11036
TCGA: ENSG00000242441
COSMIC: GTF2A1L

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000242441ENST00000403751Q9UNN4
ENSG00000242441ENST00000403751A0A140VKA3
ENSG00000242441ENST00000423675F8WE56
ENSG00000242441ENST00000430487Q9UNN4
ENSG00000242441ENST00000437125C9JJY0
ENSG00000242441ENST00000448460C9J2C1
ENSG00000242441ENST00000508440H0Y8M0

Expression (GTEx)

0
10
20
30
40
50
60
70
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Basal transcription factorsKEGGko03022
Basal transcription factorsKEGGhsa03022
Viral carcinogenesisKEGGhsa05203
Viral carcinogenesisKEGGko05203

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
118891322002Regulation of ALF gene expression in somatic and male germ line tissues involves partial and site-specific patterns of methylation.8
165257152006Involvement of ALF in human spermatogenesis and male infertility.3
166466642006Transcription Factor IIA tau is associated with undifferentiated cells and its gene expression is repressed in primary neurons at the chromatin level in vivo.2
253743922015Association of single nucleotide polymorphisms in the USF1, GTF2A1L and OR2W3 genes with non-obstructive azoospermia in the Chinese population.2

Citation

Dessen P

GTF2A1L (general transcription factor IIA subunit 1 like)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/64083/gtf2a1l