Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GTF2A1L (general transcription factor IIA subunit 1 like)

Identity

Alias_namesgeneral transcription factor IIA, 1-like
general transcription factor IIA 1 like
Alias_symbol (synonym)ALF
Other alias
HGNC (Hugo) GTF2A1L
LocusID (NCBI) 11036
Atlas_Id 64083
Location 2p16.3  [Link to chromosome band 2p16]
Location_base_pair Starts at 48617780 and ends at 48679611 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
STON1 (2p16.3) / GTF2A1L (2p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF2A1L   30727
Cards
Entrez_Gene (NCBI)GTF2A1L  11036  general transcription factor IIA subunit 1 like
AliasesALF
GeneCards (Weizmann)GTF2A1L
Ensembl hg19 (Hinxton)ENSG00000242441 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242441 [Gene_View]  chr2:48617780-48679611 [Contig_View]  GTF2A1L [Vega]
ICGC DataPortalENSG00000242441
TCGA cBioPortalGTF2A1L
AceView (NCBI)GTF2A1L
Genatlas (Paris)GTF2A1L
WikiGenes11036
SOURCE (Princeton)GTF2A1L
Genetics Home Reference (NIH)GTF2A1L
Genomic and cartography
GoldenPath hg38 (UCSC)GTF2A1L  -     chr2:48617780-48679611 +  2p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTF2A1L  -     2p16.3   [Description]    (hg19-Feb_2009)
EnsemblGTF2A1L - 2p16.3 [CytoView hg19]  GTF2A1L - 2p16.3 [CytoView hg38]
Mapping of homologs : NCBIGTF2A1L [Mapview hg19]  GTF2A1L [Mapview hg38]
OMIM605358   
Gene and transcription
Genbank (Entrez)AF106857 AI037906 AK223350 AK302220 BC025991
RefSeq transcript (Entrez)NM_001193487 NM_006872 NM_172196
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTF2A1L
Cluster EST : UnigeneHs.732016 [ NCBI ]
CGAP (NCI)Hs.732016
Alternative Splicing GalleryENSG00000242441
Gene ExpressionGTF2A1L [ NCBI-GEO ]   GTF2A1L [ EBI - ARRAY_EXPRESS ]   GTF2A1L [ SEEK ]   GTF2A1L [ MEM ]
Gene Expression Viewer (FireBrowse)GTF2A1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11036
GTEX Portal (Tissue expression)GTF2A1L
Human Protein AtlasENSG00000242441-GTF2A1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNN4
Splice isoforms : SwissVarQ9UNN4
PhosPhoSitePlusQ9UNN4
Domains : Interpro (EBI)TFIIA_a-hlx    TFIIA_asu/bsu    TFIIA_asu_N    TFIIA_b-brl   
Domain families : Pfam (Sanger)TFIIA (PF03153)   
Domain families : Pfam (NCBI)pfam03153   
Domain families : Smart (EMBL)TFIIA (SM01371)  
Conserved Domain (NCBI)GTF2A1L
DMDM Disease mutations11036
Blocks (Seattle)GTF2A1L
SuperfamilyQ9UNN4
Human Protein Atlas [tissue]ENSG00000242441-GTF2A1L [tissue]
Peptide AtlasQ9UNN4
HPRD05640
IPIIPI00009269   IPI00893167   IPI00892826   IPI00332543   IPI00965737   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNN4
IntAct (EBI)Q9UNN4
FunCoupENSG00000242441
BioGRIDGTF2A1L
STRING (EMBL)GTF2A1L
ZODIACGTF2A1L
Ontologies - Pathways
QuickGOQ9UNN4
Ontology : AmiGODNA binding  transcription coactivator activity  protein binding  transcription factor TFIIA complex  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  cognition  
Ontology : EGO-EBIDNA binding  transcription coactivator activity  protein binding  transcription factor TFIIA complex  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  cognition  
Pathways : KEGGBasal transcription factors    Viral carcinogenesis   
NDEx NetworkGTF2A1L
Atlas of Cancer Signalling NetworkGTF2A1L
Wikipedia pathwaysGTF2A1L
Orthology - Evolution
OrthoDB11036
GeneTree (enSembl)ENSG00000242441
Phylogenetic Trees/Animal Genes : TreeFamGTF2A1L
HOVERGENQ9UNN4
HOGENOMQ9UNN4
Homologs : HomoloGeneGTF2A1L
Homology/Alignments : Family Browser (UCSC)GTF2A1L
Gene fusions - Rearrangements
Tumor Fusion PortalGTF2A1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF2A1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF2A1L
dbVarGTF2A1L
ClinVarGTF2A1L
1000_GenomesGTF2A1L 
Exome Variant ServerGTF2A1L
ExAC (Exome Aggregation Consortium)ENSG00000242441
GNOMAD BrowserENSG00000242441
Genetic variants : HAPMAP11036
Genomic Variants (DGV)GTF2A1L [DGVbeta]
DECIPHERGTF2A1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTF2A1L 
Mutations
ICGC Data PortalGTF2A1L 
TCGA Data PortalGTF2A1L 
Broad Tumor PortalGTF2A1L
OASIS PortalGTF2A1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF2A1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF2A1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF2A1L
DgiDB (Drug Gene Interaction Database)GTF2A1L
DoCM (Curated mutations)GTF2A1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF2A1L (select a term)
intoGenGTF2A1L
Cancer3DGTF2A1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605358   
Orphanet
DisGeNETGTF2A1L
MedgenGTF2A1L
Genetic Testing Registry GTF2A1L
NextProtQ9UNN4 [Medical]
TSGene11036
GENETestsGTF2A1L
Target ValidationGTF2A1L
Huge Navigator GTF2A1L [HugePedia]
snp3D : Map Gene to Disease11036
BioCentury BCIQGTF2A1L
ClinGenGTF2A1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11036
Chemical/Pharm GKB GenePA162390383
Clinical trialGTF2A1L
Miscellaneous
canSAR (ICR)GTF2A1L (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF2A1L
EVEXGTF2A1L
GoPubMedGTF2A1L
iHOPGTF2A1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:04:39 CET 2017

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