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GTF2E1 (general transcription factor IIE subunit 1)

Identity

Alias (NCBI)FE
TF2E1
TFIIE-A
HGNC (Hugo) GTF2E1
HGNC Alias symbTFIIE-A
FE
HGNC Alias nameTFIIE alpha subunit
HGNC Previous namegeneral transcription factor IIE, polypeptide 1 (alpha subunit, 56kD)
 general transcription factor IIE, polypeptide 1, alpha 56kDa
LocusID (NCBI) 2960
Atlas_Id 50013
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 120742744 and ends at 120783069 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DSG2 (18q12.1) / GTF2E1 (3q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GTF2E1   4650
Cards
Entrez_Gene (NCBI)GTF2E1    general transcription factor IIE subunit 1
AliasesFE; TF2E1; TFIIE-A
GeneCards (Weizmann)GTF2E1
Ensembl hg19 (Hinxton)ENSG00000153767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153767 [Gene_View]  ENSG00000153767 [Sequence]  chr3:120742744-120783069 [Contig_View]  GTF2E1 [Vega]
ICGC DataPortalENSG00000153767
TCGA cBioPortalGTF2E1
AceView (NCBI)GTF2E1
Genatlas (Paris)GTF2E1
SOURCE (Princeton)GTF2E1
Genetics Home Reference (NIH)GTF2E1
Genomic and cartography
GoldenPath hg38 (UCSC)GTF2E1  -     chr3:120742744-120783069 +  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTF2E1  -     3q13.33   [Description]    (hg19-Feb_2009)
GoldenPathGTF2E1 - 3q13.33 [CytoView hg19]  GTF2E1 - 3q13.33 [CytoView hg38]
ImmunoBaseENSG00000153767
Genome Data Viewer NCBIGTF2E1 [Mapview hg19]  
OMIM189962   
Gene and transcription
Genbank (Entrez)AK223401 BC005917 DA498425 S67859 X63468
RefSeq transcript (Entrez)NM_005513
Consensus coding sequences : CCDS (NCBI)GTF2E1
Gene ExpressionGTF2E1 [ NCBI-GEO ]   GTF2E1 [ EBI - ARRAY_EXPRESS ]   GTF2E1 [ SEEK ]   GTF2E1 [ MEM ]
Gene Expression Viewer (FireBrowse)GTF2E1 [ Firebrowse - Broad ]
GenevisibleExpression of GTF2E1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2960
GTEX Portal (Tissue expression)GTF2E1
Human Protein AtlasENSG00000153767-GTF2E1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29083   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29083  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29083
PhosPhoSitePlusP29083
Domaine pattern : Prosite (Expaxy)HTH_TFE_IIE (PS51344)   
Domains : Interpro (EBI)TFE    TFIIE/TFIIEa_HTH    TFIIE_asu    TFIIE_asu_C    TFIIEa/SarR/Rpc3_HTH_dom    Znf_RING/FYVE/PHD    Znf_TFIIB   
Domain families : Pfam (Sanger)TF_Zn_Ribbon (PF08271)    TFIIE-A_C (PF11521)    TFIIE_alpha (PF02002)   
Domain families : Pfam (NCBI)pfam08271    pfam11521    pfam02002   
Domain families : Smart (EMBL)TFIIE (SM00531)  
Conserved Domain (NCBI)GTF2E1
PDB (RSDB)1VD4    2JTX    2RNQ    2RNR    5GPY    5IY6    5IY7    5IY8    5IY9    5IYA    5IYB    5IYC    5IYD    6O9L   
PDB Europe1VD4    2JTX    2RNQ    2RNR    5GPY    5IY6    5IY7    5IY8    5IY9    5IYA    5IYB    5IYC    5IYD    6O9L   
PDB (PDBSum)1VD4    2JTX    2RNQ    2RNR    5GPY    5IY6    5IY7    5IY8    5IY9    5IYA    5IYB    5IYC    5IYD    6O9L   
PDB (IMB)1VD4    2JTX    2RNQ    2RNR    5GPY    5IY6    5IY7    5IY8    5IY9    5IYA    5IYB    5IYC    5IYD    6O9L   
Structural Biology KnowledgeBase1VD4    2JTX    2RNQ    2RNR    5GPY    5IY6    5IY7    5IY8    5IY9    5IYA    5IYB    5IYC    5IYD    6O9L   
SCOP (Structural Classification of Proteins)1VD4    2JTX    2RNQ    2RNR    5GPY    5IY6    5IY7    5IY8    5IY9    5IYA    5IYB    5IYC    5IYD    6O9L   
CATH (Classification of proteins structures)1VD4    2JTX    2RNQ    2RNR    5GPY    5IY6    5IY7    5IY8    5IY9    5IYA    5IYB    5IYC    5IYD    6O9L   
SuperfamilyP29083
AlphaFold pdb e-kbP29083   
Human Protein Atlas [tissue]ENSG00000153767-GTF2E1 [tissue]
HPRD01799
Protein Interaction databases
DIP (DOE-UCLA)P29083
IntAct (EBI)P29083
BioGRIDGTF2E1
STRING (EMBL)GTF2E1
ZODIACGTF2E1
Ontologies - Pathways
QuickGOP29083
Ontology : AmiGOtranscription open complex formation at RNA polymerase II promoter  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription factor TFIIE complex  cytosol  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  RNA polymerase II general transcription initiation factor activity  snRNA transcription by RNA polymerase II  metal ion binding  transcription preinitiation complex  
Ontology : EGO-EBItranscription open complex formation at RNA polymerase II promoter  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription factor TFIID complex  transcription factor TFIIE complex  cytosol  transcription by RNA polymerase II  transcription by RNA polymerase II  transcription initiation from RNA polymerase II promoter  RNA polymerase II general transcription initiation factor activity  snRNA transcription by RNA polymerase II  metal ion binding  transcription preinitiation complex  
Pathways : KEGGBasal transcription factors    Epstein-Barr virus infection    Viral carcinogenesis   
NDEx NetworkGTF2E1
Atlas of Cancer Signalling NetworkGTF2E1
Wikipedia pathwaysGTF2E1
Orthology - Evolution
OrthoDB2960
GeneTree (enSembl)ENSG00000153767
Phylogenetic Trees/Animal Genes : TreeFamGTF2E1
Homologs : HomoloGeneGTF2E1
Homology/Alignments : Family Browser (UCSC)GTF2E1
Gene fusions - Rearrangements
Fusion : QuiverGTF2E1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF2E1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF2E1
dbVarGTF2E1
ClinVarGTF2E1
MonarchGTF2E1
1000_GenomesGTF2E1 
Exome Variant ServerGTF2E1
GNOMAD BrowserENSG00000153767
Varsome BrowserGTF2E1
ACMGGTF2E1 variants
VarityP29083
Genomic Variants (DGV)GTF2E1 [DGVbeta]
DECIPHERGTF2E1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTF2E1 
Mutations
ICGC Data PortalGTF2E1 
TCGA Data PortalGTF2E1 
Broad Tumor PortalGTF2E1
OASIS PortalGTF2E1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF2E1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGTF2E1
Mutations and Diseases : HGMDGTF2E1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGTF2E1
DgiDB (Drug Gene Interaction Database)GTF2E1
DoCM (Curated mutations)GTF2E1
CIViC (Clinical Interpretations of Variants in Cancer)GTF2E1
Cancer3DGTF2E1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM189962   
Orphanet
DisGeNETGTF2E1
MedgenGTF2E1
Genetic Testing Registry GTF2E1
NextProtP29083 [Medical]
GENETestsGTF2E1
Target ValidationGTF2E1
Huge Navigator GTF2E1 [HugePedia]
ClinGenGTF2E1
Clinical trials, drugs, therapy
MyCancerGenomeGTF2E1
Protein Interactions : CTDGTF2E1
Pharm GKB GenePA29036
PharosP29083
Clinical trialGTF2E1
Miscellaneous
canSAR (ICR)GTF2E1
HarmonizomeGTF2E1
DataMed IndexGTF2E1
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGTF2E1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:11:42 CEST 2021

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