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GTF2H2C (GTF2H2 family member C)

Identity

Alias_namesgeneral transcription factor IIH
Other aliasGTF2H2C_2
HGNC (Hugo) GTF2H2C
LocusID (NCBI) 728340
Atlas_Id 50624
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69560224 and ends at 69592902 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF2H2C   31394
Cards
Entrez_Gene (NCBI)GTF2H2C  728340  GTF2H2 family member C
AliasesGTF2H2C_2
GeneCards (Weizmann)GTF2H2C
Ensembl hg19 (Hinxton)ENSG00000183474 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183474 [Gene_View]  chr5:69560224-69592902 [Contig_View]  GTF2H2C [Vega]
ICGC DataPortalENSG00000183474
TCGA cBioPortalGTF2H2C
AceView (NCBI)GTF2H2C
Genatlas (Paris)GTF2H2C
WikiGenes728340
SOURCE (Princeton)GTF2H2C
Genetics Home Reference (NIH)GTF2H2C
Genomic and cartography
GoldenPath hg38 (UCSC)GTF2H2C  -     chr5:69560224-69592902 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTF2H2C  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblGTF2H2C - 5q13.2 [CytoView hg19]  GTF2H2C - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIGTF2H2C [Mapview hg19]  GTF2H2C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292361 AK315282 BC105980 BC157894 BC171860
RefSeq transcript (Entrez)NM_001098728
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTF2H2C
Cluster EST : UnigeneHs.422901 [ NCBI ]
CGAP (NCI)Hs.422901
Alternative Splicing GalleryENSG00000183474
Gene ExpressionGTF2H2C [ NCBI-GEO ]   GTF2H2C [ EBI - ARRAY_EXPRESS ]   GTF2H2C [ SEEK ]   GTF2H2C [ MEM ]
Gene Expression Viewer (FireBrowse)GTF2H2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728340
GTEX Portal (Tissue expression)GTF2H2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1K8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1K8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1K8
Splice isoforms : SwissVarQ6P1K8
PhosPhoSitePlusQ6P1K8
Domaine pattern : Prosite (Expaxy)VWFA (PS50234)   
Domains : Interpro (EBI)Ssl1-like    TFIIH_C1-like_dom    TFIIH_SSL1/p44    VWF_A    Znf_C2H2   
Domain families : Pfam (Sanger)C1_4 (PF07975)    Ssl1 (PF04056)   
Domain families : Pfam (NCBI)pfam07975    pfam04056   
Domain families : Smart (EMBL)C1_4 (SM01047)  VWA (SM00327)  
Conserved Domain (NCBI)GTF2H2C
DMDM Disease mutations728340
Blocks (Seattle)GTF2H2C
SuperfamilyQ6P1K8
Human Protein AtlasENSG00000183474
Peptide AtlasQ6P1K8
Protein Interaction databases
DIP (DOE-UCLA)Q6P1K8
IntAct (EBI)Q6P1K8
FunCoupENSG00000183474
BioGRIDGTF2H2C
STRING (EMBL)GTF2H2C
ZODIACGTF2H2C
Ontologies - Pathways
QuickGOQ6P1K8
Ontology : AmiGOcore TFIIH complex  nucleic acid binding  protein binding  holo TFIIH complex  nucleotide-excision repair  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  zinc ion binding  nuclear speck  
Ontology : EGO-EBIcore TFIIH complex  nucleic acid binding  protein binding  holo TFIIH complex  nucleotide-excision repair  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  zinc ion binding  nuclear speck  
Pathways : KEGGBasal transcription factors    Nucleotide excision repair    Viral carcinogenesis   
NDEx NetworkGTF2H2C
Atlas of Cancer Signalling NetworkGTF2H2C
Wikipedia pathwaysGTF2H2C
Orthology - Evolution
OrthoDB728340
GeneTree (enSembl)ENSG00000183474
Phylogenetic Trees/Animal Genes : TreeFamGTF2H2C
HOVERGENQ6P1K8
HOGENOMQ6P1K8
Homologs : HomoloGeneGTF2H2C
Homology/Alignments : Family Browser (UCSC)GTF2H2C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF2H2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF2H2C
dbVarGTF2H2C
ClinVarGTF2H2C
1000_GenomesGTF2H2C 
Exome Variant ServerGTF2H2C
ExAC (Exome Aggregation Consortium)GTF2H2C (select the gene name)
Genetic variants : HAPMAP728340
Genomic Variants (DGV)GTF2H2C [DGVbeta]
DECIPHERGTF2H2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTF2H2C 
Mutations
ICGC Data PortalGTF2H2C 
TCGA Data PortalGTF2H2C 
Broad Tumor PortalGTF2H2C
OASIS PortalGTF2H2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF2H2C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF2H2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF2H2C
DgiDB (Drug Gene Interaction Database)GTF2H2C
DoCM (Curated mutations)GTF2H2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF2H2C (select a term)
intoGenGTF2H2C
Cancer3DGTF2H2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGTF2H2C
Genetic Testing Registry GTF2H2C
NextProtQ6P1K8 [Medical]
TSGene728340
GENETestsGTF2H2C
Target ValidationGTF2H2C
Huge Navigator GTF2H2C [HugePedia]
snp3D : Map Gene to Disease728340
BioCentury BCIQGTF2H2C
ClinGenGTF2H2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728340
Chemical/Pharm GKB GenePA164720312
Clinical trialGTF2H2C
Miscellaneous
canSAR (ICR)GTF2H2C (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF2H2C
EVEXGTF2H2C
GoPubMedGTF2H2C
iHOPGTF2H2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:02:37 CEST 2017

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