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GTF2H2C_2 (GTF2H2 family member C, copy 2)

Identity

Alias_namesGTF2H2D
general transcription factor IIH
Alias_symbol (synonym)LOC730394
Other alias
HGNC (Hugo) GTF2H2C_2
LocusID (NCBI) 730394
Atlas_Id 53855
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 68856074 and ends at 68888352 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF2H2C_2   35418
Cards
Entrez_Gene (NCBI)GTF2H2C_2  730394  GTF2H2 family member C, copy 2
AliasesGTF2H2D
GeneCards (Weizmann)GTF2H2C_2
Ensembl hg19 (Hinxton) [Gene_View]  chr5:68856074-68888352 [Contig_View]  GTF2H2C_2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:68856074-68888352 [Contig_View]  GTF2H2C_2 [Vega]
TCGA cBioPortalGTF2H2C_2
AceView (NCBI)GTF2H2C_2
Genatlas (Paris)GTF2H2C_2
WikiGenes730394
SOURCE (Princeton)GTF2H2C_2
Genetics Home Reference (NIH)GTF2H2C_2
Genomic and cartography
GoldenPath hg19 (UCSC)GTF2H2C_2  -     chr5:68856074-68888352 +  5q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GTF2H2C_2  -     5q13.2   [Description]    (hg38-Dec_2013)
EnsemblGTF2H2C_2 - 5q13.2 [CytoView hg19]  GTF2H2C_2 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIGTF2H2C_2 [Mapview hg19]  GTF2H2C_2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC064557 BC065021 BX647445
RefSeq transcript (Entrez)NM_001042490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTF2H2C_2
Cluster EST : UnigeneHs.422901 [ NCBI ]
CGAP (NCI)Hs.422901
Gene ExpressionGTF2H2C_2 [ NCBI-GEO ]   GTF2H2C_2 [ EBI - ARRAY_EXPRESS ]   GTF2H2C_2 [ SEEK ]   GTF2H2C_2 [ MEM ]
Gene Expression Viewer (FireBrowse)GTF2H2C_2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730394
GTEX Portal (Tissue expression)GTF2H2C_2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1K8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1K8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1K8
Splice isoforms : SwissVarQ6P1K8
PhosPhoSitePlusQ6P1K8
Domaine pattern : Prosite (Expaxy)VWFA (PS50234)   
Domains : Interpro (EBI)Ssl1-like    TFIIH_C1-like_dom    TFIIH_SSL1/p44    VWF_A    Znf_C2H2   
Domain families : Pfam (Sanger)C1_4 (PF07975)    Ssl1 (PF04056)   
Domain families : Pfam (NCBI)pfam07975    pfam04056   
Domain families : Smart (EMBL)C1_4 (SM01047)  VWA (SM00327)  
Conserved Domain (NCBI)GTF2H2C_2
DMDM Disease mutations730394
Blocks (Seattle)GTF2H2C_2
SuperfamilyQ6P1K8
Peptide AtlasQ6P1K8
Protein Interaction databases
DIP (DOE-UCLA)Q6P1K8
IntAct (EBI)Q6P1K8
BioGRIDGTF2H2C_2
STRING (EMBL)GTF2H2C_2
ZODIACGTF2H2C_2
Ontologies - Pathways
QuickGOQ6P1K8
Ontology : AmiGOcore TFIIH complex  protein binding  nucleotide-excision repair  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIcore TFIIH complex  protein binding  nucleotide-excision repair  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkGTF2H2C_2
Atlas of Cancer Signalling NetworkGTF2H2C_2
Wikipedia pathwaysGTF2H2C_2
Orthology - Evolution
OrthoDB730394
Phylogenetic Trees/Animal Genes : TreeFamGTF2H2C_2
HOVERGENQ6P1K8
HOGENOMQ6P1K8
Homologs : HomoloGeneGTF2H2C_2
Homology/Alignments : Family Browser (UCSC)GTF2H2C_2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF2H2C_2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF2H2C_2
dbVarGTF2H2C_2
ClinVarGTF2H2C_2
1000_GenomesGTF2H2C_2 
Exome Variant ServerGTF2H2C_2
ExAC (Exome Aggregation Consortium)GTF2H2C_2 (select the gene name)
Genetic variants : HAPMAP730394
Genomic Variants (DGV)GTF2H2C_2 [DGVbeta]
DECIPHER (Syndromes)5:68856074-68888352  
CONAN: Copy Number AnalysisGTF2H2C_2 
Mutations
ICGC Data PortalGTF2H2C_2 
TCGA Data PortalGTF2H2C_2 
Broad Tumor PortalGTF2H2C_2
OASIS PortalGTF2H2C_2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGTF2H2C_2
BioMutasearch GTF2H2C_2
DgiDB (Drug Gene Interaction Database)GTF2H2C_2
DoCM (Curated mutations)GTF2H2C_2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF2H2C_2 (select a term)
intoGenGTF2H2C_2
Cancer3DGTF2H2C_2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGTF2H2C_2
Genetic Testing Registry GTF2H2C_2
NextProtQ6P1K8 [Medical]
TSGene730394
GENETestsGTF2H2C_2
Huge Navigator GTF2H2C_2 [HugePedia]
snp3D : Map Gene to Disease730394
BioCentury BCIQGTF2H2C_2
ClinGenGTF2H2C_2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD730394
Chemical/Pharm GKB GenePA164720349
Clinical trialGTF2H2C_2
Miscellaneous
canSAR (ICR)GTF2H2C_2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF2H2C_2
EVEXGTF2H2C_2
GoPubMedGTF2H2C_2
iHOPGTF2H2C_2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:03:14 CEST 2017

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