Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GTF2IRD2 (GTF2I repeat domain containing 2)

Identity

Alias_symbol (synonym)FLJ37938
GTF2IRD2A
Other aliasFP630
GTF2IRD2 alpha
HGNC (Hugo) GTF2IRD2
LocusID (NCBI) 84163
Atlas_Id 64091
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 74247756 and ends at 74267872 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF2IRD2   30775
Cards
Entrez_Gene (NCBI)GTF2IRD2  84163  GTF2I repeat domain containing 2
AliasesFP630; GTF2IRD2; GTF2IRD2A
GeneCards (Weizmann)GTF2IRD2
Ensembl hg19 (Hinxton)ENSG00000196275 [Gene_View]  chr7:74247756-74267872 [Contig_View]  GTF2IRD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196275 [Gene_View]  chr7:74247756-74267872 [Contig_View]  GTF2IRD2 [Vega]
ICGC DataPortalENSG00000196275
TCGA cBioPortalGTF2IRD2
AceView (NCBI)GTF2IRD2
Genatlas (Paris)GTF2IRD2
WikiGenes84163
SOURCE (Princeton)GTF2IRD2
Genetics Home Reference (NIH)GTF2IRD2
Genomic and cartography
GoldenPath hg19 (UCSC)GTF2IRD2  -     chr7:74247756-74267872 -  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GTF2IRD2  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblGTF2IRD2 - 7q11.23 [CytoView hg19]  GTF2IRD2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIGTF2IRD2 [Mapview hg19]  GTF2IRD2 [Mapview hg38]
OMIM608899   
Gene and transcription
Genbank (Entrez)AK095257 AK123716 AK124334 AK225845 AK291431
RefSeq transcript (Entrez)NM_001281447 NM_173537
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)GTF2IRD2
Cluster EST : UnigeneHs.647039 [ NCBI ]
CGAP (NCI)Hs.647039
Alternative Splicing GalleryENSG00000196275
Gene ExpressionGTF2IRD2 [ NCBI-GEO ]   GTF2IRD2 [ EBI - ARRAY_EXPRESS ]   GTF2IRD2 [ SEEK ]   GTF2IRD2 [ MEM ]
Gene Expression Viewer (FireBrowse)GTF2IRD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84163
GTEX Portal (Tissue expression)GTF2IRD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UP8
Splice isoforms : SwissVarQ86UP8
PhosPhoSitePlusQ86UP8
Domaine pattern : Prosite (Expaxy)GTF2I (PS51139)   
Domains : Interpro (EBI)GTF2I    RNaseH-like_dom    Znf_C2H2-like   
Domain families : Pfam (Sanger)GTF2I (PF02946)   
Domain families : Pfam (NCBI)pfam02946   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)GTF2IRD2
DMDM Disease mutations84163
Blocks (Seattle)GTF2IRD2
SuperfamilyQ86UP8
Human Protein AtlasENSG00000196275
Peptide AtlasQ86UP8
HPRD16402
IPIIPI00478385   IPI00329161   IPI00441464   IPI00884976   IPI00879176   IPI00434720   
Protein Interaction databases
DIP (DOE-UCLA)Q86UP8
IntAct (EBI)Q86UP8
FunCoupENSG00000196275
BioGRIDGTF2IRD2
STRING (EMBL)GTF2IRD2
ZODIACGTF2IRD2
Ontologies - Pathways
QuickGOQ86UP8
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkGTF2IRD2
Atlas of Cancer Signalling NetworkGTF2IRD2
Wikipedia pathwaysGTF2IRD2
Orthology - Evolution
OrthoDB84163
GeneTree (enSembl)ENSG00000196275
Phylogenetic Trees/Animal Genes : TreeFamGTF2IRD2
HOVERGENQ86UP8
HOGENOMQ86UP8
Homologs : HomoloGeneGTF2IRD2
Homology/Alignments : Family Browser (UCSC)GTF2IRD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF2IRD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF2IRD2
dbVarGTF2IRD2
ClinVarGTF2IRD2
1000_GenomesGTF2IRD2 
Exome Variant ServerGTF2IRD2
ExAC (Exome Aggregation Consortium)GTF2IRD2 (select the gene name)
Genetic variants : HAPMAP84163
Genomic Variants (DGV)GTF2IRD2 [DGVbeta]
DECIPHER (Syndromes)7:74247756-74267872  ENSG00000196275
CONAN: Copy Number AnalysisGTF2IRD2 
Mutations
ICGC Data PortalGTF2IRD2 
TCGA Data PortalGTF2IRD2 
Broad Tumor PortalGTF2IRD2
OASIS PortalGTF2IRD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF2IRD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF2IRD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF2IRD2
DgiDB (Drug Gene Interaction Database)GTF2IRD2
DoCM (Curated mutations)GTF2IRD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF2IRD2 (select a term)
intoGenGTF2IRD2
Cancer3DGTF2IRD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608899   
Orphanet
MedgenGTF2IRD2
Genetic Testing Registry GTF2IRD2
NextProtQ86UP8 [Medical]
TSGene84163
GENETestsGTF2IRD2
Huge Navigator GTF2IRD2 [HugePedia]
snp3D : Map Gene to Disease84163
BioCentury BCIQGTF2IRD2
ClinGenGTF2IRD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84163
Chemical/Pharm GKB GenePA162390407
Clinical trialGTF2IRD2
Miscellaneous
canSAR (ICR)GTF2IRD2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF2IRD2
EVEXGTF2IRD2
GoPubMedGTF2IRD2
iHOPGTF2IRD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:08 CET 2017

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