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GTF2IRD2B (GTF2I repeat domain containing 2B)

Identity

Other alias-
HGNC (Hugo) GTF2IRD2B
LocusID (NCBI) 389524
Atlas_Id 64092
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75092556 and ends at 75149817 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

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Nomenclature
HGNC (Hugo)GTF2IRD2B   33125
Cards
Entrez_Gene (NCBI)GTF2IRD2B  389524  GTF2I repeat domain containing 2B
Aliases
GeneCards (Weizmann)GTF2IRD2B
Ensembl hg19 (Hinxton)ENSG00000174428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174428 [Gene_View]  chr7:75092556-75149817 [Contig_View]  GTF2IRD2B [Vega]
ICGC DataPortalENSG00000174428
TCGA cBioPortalGTF2IRD2B
AceView (NCBI)GTF2IRD2B
Genatlas (Paris)GTF2IRD2B
WikiGenes389524
SOURCE (Princeton)GTF2IRD2B
Genetics Home Reference (NIH)GTF2IRD2B
Genomic and cartography
GoldenPath hg38 (UCSC)GTF2IRD2B  -     chr7:75092556-75149817 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTF2IRD2B  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblGTF2IRD2B - 7q11.23 [CytoView hg19]  GTF2IRD2B - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIGTF2IRD2B [Mapview hg19]  GTF2IRD2B [Mapview hg38]
OMIM608900   
Gene and transcription
Genbank (Entrez)AK025076 AK095572 AK098269 AY312850 AY312851
RefSeq transcript (Entrez)NM_001003795
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTF2IRD2B
Cluster EST : UnigeneHs.647039 [ NCBI ]
CGAP (NCI)Hs.647039
Alternative Splicing GalleryENSG00000174428
Gene ExpressionGTF2IRD2B [ NCBI-GEO ]   GTF2IRD2B [ EBI - ARRAY_EXPRESS ]   GTF2IRD2B [ SEEK ]   GTF2IRD2B [ MEM ]
Gene Expression Viewer (FireBrowse)GTF2IRD2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389524
GTEX Portal (Tissue expression)GTF2IRD2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6EKJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6EKJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6EKJ0
Splice isoforms : SwissVarQ6EKJ0
PhosPhoSitePlusQ6EKJ0
Domaine pattern : Prosite (Expaxy)GTF2I (PS51139)   
Domains : Interpro (EBI)GTF2I    RNaseH-like_dom   
Domain families : Pfam (Sanger)GTF2I (PF02946)   
Domain families : Pfam (NCBI)pfam02946   
Conserved Domain (NCBI)GTF2IRD2B
DMDM Disease mutations389524
Blocks (Seattle)GTF2IRD2B
PDB (SRS)2E3L   
PDB (PDBSum)2E3L   
PDB (IMB)2E3L   
PDB (RSDB)2E3L   
Structural Biology KnowledgeBase2E3L   
SCOP (Structural Classification of Proteins)2E3L   
CATH (Classification of proteins structures)2E3L   
SuperfamilyQ6EKJ0
Human Protein AtlasENSG00000174428
Peptide AtlasQ6EKJ0
HPRD12327
IPIIPI00853395   IPI00432873   IPI00926158   
Protein Interaction databases
DIP (DOE-UCLA)Q6EKJ0
IntAct (EBI)Q6EKJ0
FunCoupENSG00000174428
BioGRIDGTF2IRD2B
STRING (EMBL)GTF2IRD2B
ZODIACGTF2IRD2B
Ontologies - Pathways
QuickGOQ6EKJ0
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  multicellular organism development  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  multicellular organism development  
NDEx NetworkGTF2IRD2B
Atlas of Cancer Signalling NetworkGTF2IRD2B
Wikipedia pathwaysGTF2IRD2B
Orthology - Evolution
OrthoDB389524
GeneTree (enSembl)ENSG00000174428
Phylogenetic Trees/Animal Genes : TreeFamGTF2IRD2B
HOVERGENQ6EKJ0
HOGENOMQ6EKJ0
Homologs : HomoloGeneGTF2IRD2B
Homology/Alignments : Family Browser (UCSC)GTF2IRD2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF2IRD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF2IRD2B
dbVarGTF2IRD2B
ClinVarGTF2IRD2B
1000_GenomesGTF2IRD2B 
Exome Variant ServerGTF2IRD2B
ExAC (Exome Aggregation Consortium)GTF2IRD2B (select the gene name)
Genetic variants : HAPMAP389524
Genomic Variants (DGV)GTF2IRD2B [DGVbeta]
DECIPHERGTF2IRD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTF2IRD2B 
Mutations
ICGC Data PortalGTF2IRD2B 
TCGA Data PortalGTF2IRD2B 
Broad Tumor PortalGTF2IRD2B
OASIS PortalGTF2IRD2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF2IRD2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF2IRD2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF2IRD2B
DgiDB (Drug Gene Interaction Database)GTF2IRD2B
DoCM (Curated mutations)GTF2IRD2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF2IRD2B (select a term)
intoGenGTF2IRD2B
Cancer3DGTF2IRD2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608900   
Orphanet
MedgenGTF2IRD2B
Genetic Testing Registry GTF2IRD2B
NextProtQ6EKJ0 [Medical]
TSGene389524
GENETestsGTF2IRD2B
Target ValidationGTF2IRD2B
Huge Navigator GTF2IRD2B [HugePedia]
snp3D : Map Gene to Disease389524
BioCentury BCIQGTF2IRD2B
ClinGenGTF2IRD2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389524
Chemical/Pharm GKB GenePA162390444
Clinical trialGTF2IRD2B
Miscellaneous
canSAR (ICR)GTF2IRD2B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF2IRD2B
EVEXGTF2IRD2B
GoPubMedGTF2IRD2B
iHOPGTF2IRD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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