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GTF3A (general transcription factor IIIA)

Identity

Alias (NCBI)AP2
TFIIIA
HGNC (Hugo) GTF3A
HGNC Alias symbTFIIIA
AP2
LocusID (NCBI) 2971
Atlas_Id 43752
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27424619 and ends at 27435823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GTF3A (13q12.2) / MCM2 (3q21.3)KIAA1549 (7q34) / GTF3A (13q12.2)SART3 (12q23.3) / GTF3A (13q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GTF3A   4662
Cards
Entrez_Gene (NCBI)GTF3A    general transcription factor IIIA
AliasesAP2; TFIIIA
GeneCards (Weizmann)GTF3A
Ensembl hg19 (Hinxton)ENSG00000122034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122034 [Gene_View]  ENSG00000122034 [Sequence]  chr13:27424619-27435823 [Contig_View]  GTF3A [Vega]
ICGC DataPortalENSG00000122034
TCGA cBioPortalGTF3A
AceView (NCBI)GTF3A
Genatlas (Paris)GTF3A
SOURCE (Princeton)GTF3A
Genetics Home Reference (NIH)GTF3A
Genomic and cartography
GoldenPath hg38 (UCSC)GTF3A  -     chr13:27424619-27435823 +  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTF3A  -     13q12.2   [Description]    (hg19-Feb_2009)
GoldenPathGTF3A - 13q12.2 [CytoView hg19]  GTF3A - 13q12.2 [CytoView hg38]
ImmunoBaseENSG00000122034
Genome Data Viewer NCBIGTF3A [Mapview hg19]  
OMIM600860   
Gene and transcription
Genbank (Entrez)AK057993 AW627732 BC143711 BP254755 D32257
RefSeq transcript (Entrez)NM_002097
Consensus coding sequences : CCDS (NCBI)GTF3A
Gene ExpressionGTF3A [ NCBI-GEO ]   GTF3A [ EBI - ARRAY_EXPRESS ]   GTF3A [ SEEK ]   GTF3A [ MEM ]
Gene Expression Viewer (FireBrowse)GTF3A [ Firebrowse - Broad ]
GenevisibleExpression of GTF3A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2971
GTEX Portal (Tissue expression)GTF3A
Human Protein AtlasENSG00000122034-GTF3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92664   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92664  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92664
PhosPhoSitePlusQ92664
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)GTF3A
SuperfamilyQ92664
AlphaFold pdb e-kbQ92664   
Human Protein Atlas [tissue]ENSG00000122034-GTF3A [tissue]
HPRD02916
Protein Interaction databases
DIP (DOE-UCLA)Q92664
IntAct (EBI)Q92664
BioGRIDGTF3A
STRING (EMBL)GTF3A
ZODIACGTF3A
Ontologies - Pathways
QuickGOQ92664
Ontology : AmiGODNA binding  nucleus  nucleoplasm  nucleoplasm  transcription by RNA polymerase III  5S rRNA binding  rRNA transcription  ribosomal large subunit biogenesis  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  nucleoplasm  nucleoplasm  transcription by RNA polymerase III  5S rRNA binding  rRNA transcription  ribosomal large subunit biogenesis  metal ion binding  
NDEx NetworkGTF3A
Atlas of Cancer Signalling NetworkGTF3A
Wikipedia pathwaysGTF3A
Orthology - Evolution
OrthoDB2971
GeneTree (enSembl)ENSG00000122034
Phylogenetic Trees/Animal Genes : TreeFamGTF3A
Homologs : HomoloGeneGTF3A
Homology/Alignments : Family Browser (UCSC)GTF3A
Gene fusions - Rearrangements
Fusion : QuiverGTF3A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF3A
dbVarGTF3A
ClinVarGTF3A
MonarchGTF3A
1000_GenomesGTF3A 
Exome Variant ServerGTF3A
GNOMAD BrowserENSG00000122034
Varsome BrowserGTF3A
ACMGGTF3A variants
VarityQ92664
Genomic Variants (DGV)GTF3A [DGVbeta]
DECIPHERGTF3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTF3A 
Mutations
ICGC Data PortalGTF3A 
TCGA Data PortalGTF3A 
Broad Tumor PortalGTF3A
OASIS PortalGTF3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF3A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGTF3A
Mutations and Diseases : HGMDGTF3A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGTF3A
DgiDB (Drug Gene Interaction Database)GTF3A
DoCM (Curated mutations)GTF3A
CIViC (Clinical Interpretations of Variants in Cancer)GTF3A
Cancer3DGTF3A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600860   
Orphanet
DisGeNETGTF3A
MedgenGTF3A
Genetic Testing Registry GTF3A
NextProtQ92664 [Medical]
GENETestsGTF3A
Target ValidationGTF3A
Huge Navigator GTF3A [HugePedia]
ClinGenGTF3A
Clinical trials, drugs, therapy
MyCancerGenomeGTF3A
Protein Interactions : CTDGTF3A
Pharm GKB GenePA29048
PharosQ92664
Clinical trialGTF3A
Miscellaneous
canSAR (ICR)GTF3A
HarmonizomeGTF3A
DataMed IndexGTF3A
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGTF3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:11:44 CEST 2021

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