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GTF3A (general transcription factor IIIA)

Identity

Alias_symbol (synonym)TFIIIA
AP2
Other alias
HGNC (Hugo) GTF3A
LocusID (NCBI) 2971
Atlas_Id 43752
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27998681 and ends at 28009846 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GTF3A (13q12.2) / MCM2 (3q21.3)KIAA1549 (7q34) / GTF3A (13q12.2)SART3 (12q23.3) / GTF3A (13q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF3A   4662
Cards
Entrez_Gene (NCBI)GTF3A  2971  general transcription factor IIIA
AliasesAP2; TFIIIA
GeneCards (Weizmann)GTF3A
Ensembl hg19 (Hinxton)ENSG00000122034 [Gene_View]  chr13:27998681-28009846 [Contig_View]  GTF3A [Vega]
Ensembl hg38 (Hinxton)ENSG00000122034 [Gene_View]  chr13:27998681-28009846 [Contig_View]  GTF3A [Vega]
ICGC DataPortalENSG00000122034
TCGA cBioPortalGTF3A
AceView (NCBI)GTF3A
Genatlas (Paris)GTF3A
WikiGenes2971
SOURCE (Princeton)GTF3A
Genetics Home Reference (NIH)GTF3A
Genomic and cartography
GoldenPath hg19 (UCSC)GTF3A  -     chr13:27998681-28009846 +  13q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GTF3A  -     13q12.2   [Description]    (hg38-Dec_2013)
EnsemblGTF3A - 13q12.2 [CytoView hg19]  GTF3A - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBIGTF3A [Mapview hg19]  GTF3A [Mapview hg38]
OMIM600860   
Gene and transcription
Genbank (Entrez)AK057993 AW627732 BC143711 BP254755 D32257
RefSeq transcript (Entrez)NM_002097
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)GTF3A
Cluster EST : UnigeneHs.445977 [ NCBI ]
CGAP (NCI)Hs.445977
Alternative Splicing GalleryENSG00000122034
Gene ExpressionGTF3A [ NCBI-GEO ]   GTF3A [ EBI - ARRAY_EXPRESS ]   GTF3A [ SEEK ]   GTF3A [ MEM ]
Gene Expression Viewer (FireBrowse)GTF3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2971
GTEX Portal (Tissue expression)GTF3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92664   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92664  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92664
Splice isoforms : SwissVarQ92664
PhosPhoSitePlusQ92664
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)GTF3A
DMDM Disease mutations2971
Blocks (Seattle)GTF3A
SuperfamilyQ92664
Human Protein AtlasENSG00000122034
Peptide AtlasQ92664
HPRD02916
IPIIPI00294241   IPI00885034   IPI00893619   IPI00894324   IPI00894459   
Protein Interaction databases
DIP (DOE-UCLA)Q92664
IntAct (EBI)Q92664
FunCoupENSG00000122034
BioGRIDGTF3A
STRING (EMBL)GTF3A
ZODIACGTF3A
Ontologies - Pathways
QuickGOQ92664
Ontology : AmiGODNA binding  RNA binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase III promoter  rRNA transcription  metal ion binding  
Ontology : EGO-EBIDNA binding  RNA binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase III promoter  rRNA transcription  metal ion binding  
NDEx NetworkGTF3A
Atlas of Cancer Signalling NetworkGTF3A
Wikipedia pathwaysGTF3A
Orthology - Evolution
OrthoDB2971
GeneTree (enSembl)ENSG00000122034
Phylogenetic Trees/Animal Genes : TreeFamGTF3A
HOVERGENQ92664
HOGENOMQ92664
Homologs : HomoloGeneGTF3A
Homology/Alignments : Family Browser (UCSC)GTF3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF3A
dbVarGTF3A
ClinVarGTF3A
1000_GenomesGTF3A 
Exome Variant ServerGTF3A
ExAC (Exome Aggregation Consortium)GTF3A (select the gene name)
Genetic variants : HAPMAP2971
Genomic Variants (DGV)GTF3A [DGVbeta]
DECIPHER (Syndromes)13:27998681-28009846  ENSG00000122034
CONAN: Copy Number AnalysisGTF3A 
Mutations
ICGC Data PortalGTF3A 
TCGA Data PortalGTF3A 
Broad Tumor PortalGTF3A
OASIS PortalGTF3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF3A
DgiDB (Drug Gene Interaction Database)GTF3A
DoCM (Curated mutations)GTF3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF3A (select a term)
intoGenGTF3A
Cancer3DGTF3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600860   
Orphanet
MedgenGTF3A
Genetic Testing Registry GTF3A
NextProtQ92664 [Medical]
TSGene2971
GENETestsGTF3A
Huge Navigator GTF3A [HugePedia]
snp3D : Map Gene to Disease2971
BioCentury BCIQGTF3A
ClinGenGTF3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2971
Chemical/Pharm GKB GenePA29048
Clinical trialGTF3A
Miscellaneous
canSAR (ICR)GTF3A (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF3A
EVEXGTF3A
GoPubMedGTF3A
iHOPGTF3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:26 CET 2017

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