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GTF3C3 (general transcription factor IIIC, polypeptide 3, 102kDa)

Identity

Alias_namesgeneral transcription factor IIIC, polypeptide 3 (102kD)
general transcription factor IIIC, polypeptide 3, 102kDa
Alias_symbol (synonym)TFiiiC2-102
TFIIIC102
Other aliasTFIIICgamma
HGNC (Hugo) GTF3C3
LocusID (NCBI) 9330
Atlas_Id 64097
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 197644813 and ends at 197664492 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADAMTS5 (21q21.3) / GTF3C3 (2q33.1)LACTB (15q22.2) / GTF3C3 (2q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF3C3   4666
Cards
Entrez_Gene (NCBI)GTF3C3  9330  general transcription factor IIIC, polypeptide 3, 102kDa
AliasesTFIIIC102; TFIIICgamma; TFiiiC2-102
GeneCards (Weizmann)GTF3C3
Ensembl hg19 (Hinxton)ENSG00000119041 [Gene_View]  chr2:197644813-197664492 [Contig_View]  GTF3C3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000119041 [Gene_View]  chr2:197644813-197664492 [Contig_View]  GTF3C3 [Vega]
ICGC DataPortalENSG00000119041
TCGA cBioPortalGTF3C3
AceView (NCBI)GTF3C3
Genatlas (Paris)GTF3C3
WikiGenes9330
SOURCE (Princeton)GTF3C3
Genetics Home Reference (NIH)GTF3C3
Genomic and cartography
GoldenPath hg19 (UCSC)GTF3C3  -     chr2:197644813-197664492 -  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GTF3C3  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblGTF3C3 - 2q33.1 [CytoView hg19]  GTF3C3 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIGTF3C3 [Mapview hg19]  GTF3C3 [Mapview hg38]
OMIM604888   
Gene and transcription
Genbank (Entrez)AF085850 AF133123 AF465407 AK025560 AK027050
RefSeq transcript (Entrez)NM_001206774 NM_012086
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_030373 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)GTF3C3
Cluster EST : UnigeneHs.737375 [ NCBI ]
CGAP (NCI)Hs.737375
Alternative Splicing GalleryENSG00000119041
Gene ExpressionGTF3C3 [ NCBI-GEO ]   GTF3C3 [ EBI - ARRAY_EXPRESS ]   GTF3C3 [ SEEK ]   GTF3C3 [ MEM ]
Gene Expression Viewer (FireBrowse)GTF3C3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9330
GTEX Portal (Tissue expression)GTF3C3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5Q9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5Q9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5Q9
Splice isoforms : SwissVarQ9Y5Q9
PhosPhoSitePlusQ9Y5Q9
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam00515    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)GTF3C3
DMDM Disease mutations9330
Blocks (Seattle)GTF3C3
SuperfamilyQ9Y5Q9
Human Protein AtlasENSG00000119041
Peptide AtlasQ9Y5Q9
HPRD11997
IPIIPI00015806   IPI00411594   IPI00916749   IPI00916091   IPI00917026   IPI00917018   IPI00916736   IPI01010505   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5Q9
IntAct (EBI)Q9Y5Q9
FunCoupENSG00000119041
BioGRIDGTF3C3
STRING (EMBL)GTF3C3
ZODIACGTF3C3
Ontologies - Pathways
QuickGOQ9Y5Q9
Ontology : AmiGOtranscription factor TFIIIC complex  DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  transcription from RNA polymerase III promoter  transcription from RNA polymerase III promoter  gene expression  5S class rRNA transcription from RNA polymerase III type 1 promoter  tRNA transcription from RNA polymerase III promoter  
Ontology : EGO-EBItranscription factor TFIIIC complex  DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  transcription from RNA polymerase III promoter  transcription from RNA polymerase III promoter  gene expression  5S class rRNA transcription from RNA polymerase III type 1 promoter  tRNA transcription from RNA polymerase III promoter  
Pathways : BIOCARTARNA polymerase III transcription [Genes]   
NDEx NetworkGTF3C3
Atlas of Cancer Signalling NetworkGTF3C3
Wikipedia pathwaysGTF3C3
Orthology - Evolution
OrthoDB9330
GeneTree (enSembl)ENSG00000119041
Phylogenetic Trees/Animal Genes : TreeFamGTF3C3
HOVERGENQ9Y5Q9
HOGENOMQ9Y5Q9
Homologs : HomoloGeneGTF3C3
Homology/Alignments : Family Browser (UCSC)GTF3C3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF3C3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF3C3
dbVarGTF3C3
ClinVarGTF3C3
1000_GenomesGTF3C3 
Exome Variant ServerGTF3C3
ExAC (Exome Aggregation Consortium)GTF3C3 (select the gene name)
Genetic variants : HAPMAP9330
Genomic Variants (DGV)GTF3C3 [DGVbeta]
DECIPHER (Syndromes)2:197644813-197664492  ENSG00000119041
CONAN: Copy Number AnalysisGTF3C3 
Mutations
ICGC Data PortalGTF3C3 
TCGA Data PortalGTF3C3 
Broad Tumor PortalGTF3C3
OASIS PortalGTF3C3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF3C3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF3C3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF3C3
DgiDB (Drug Gene Interaction Database)GTF3C3
DoCM (Curated mutations)GTF3C3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF3C3 (select a term)
intoGenGTF3C3
Cancer3DGTF3C3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604888   
Orphanet
MedgenGTF3C3
Genetic Testing Registry GTF3C3
NextProtQ9Y5Q9 [Medical]
TSGene9330
GENETestsGTF3C3
Huge Navigator GTF3C3 [HugePedia]
snp3D : Map Gene to Disease9330
BioCentury BCIQGTF3C3
ClinGenGTF3C3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9330
Chemical/Pharm GKB GenePA29054
Clinical trialGTF3C3
Miscellaneous
canSAR (ICR)GTF3C3 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF3C3
EVEXGTF3C3
GoPubMedGTF3C3
iHOPGTF3C3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:09 CET 2017

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