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GTF3C5 (general transcription factor IIIC, polypeptide 5, 63kDa)

Identity

Alias_namesgeneral transcription factor IIIC, polypeptide 5 (63kD)
general transcription factor IIIC, polypeptide 5, 63kDa
Alias_symbol (synonym)TFiiiC2-63
TFIIIC63
TFIIICepsilon
Other alias
HGNC (Hugo) GTF3C5
LocusID (NCBI) 9328
Atlas_Id 64099
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 135906062 and ends at 135933890 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGFLR1 (19q13.12) / GTF3C5 (9q34.2)TMC4 (19q13.42) / GTF3C5 (9q34.2)WDR74 (11q12.3) / GTF3C5 (9q34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF3C5   4668
Cards
Entrez_Gene (NCBI)GTF3C5  9328  general transcription factor IIIC, polypeptide 5, 63kDa
AliasesTFIIIC63; TFIIICepsilon; TFiiiC2-63
GeneCards (Weizmann)GTF3C5
Ensembl hg19 (Hinxton)ENSG00000148308 [Gene_View]  chr9:135906062-135933890 [Contig_View]  GTF3C5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148308 [Gene_View]  chr9:135906062-135933890 [Contig_View]  GTF3C5 [Vega]
ICGC DataPortalENSG00000148308
TCGA cBioPortalGTF3C5
AceView (NCBI)GTF3C5
Genatlas (Paris)GTF3C5
WikiGenes9328
SOURCE (Princeton)GTF3C5
Genetics Home Reference (NIH)GTF3C5
Genomic and cartography
GoldenPath hg19 (UCSC)GTF3C5  -     chr9:135906062-135933890 +  9q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GTF3C5  -     9q34.2   [Description]    (hg38-Dec_2013)
EnsemblGTF3C5 - 9q34.2 [CytoView hg19]  GTF3C5 - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBIGTF3C5 [Mapview hg19]  GTF3C5 [Mapview hg38]
OMIM604890   
Gene and transcription
Genbank (Entrez)AF133124 AJ420443 AK000194 AK024510 AK055092
RefSeq transcript (Entrez)NM_001122823 NM_001286709 NM_012087
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367
Consensus coding sequences : CCDS (NCBI)GTF3C5
Cluster EST : UnigeneHs.495417 [ NCBI ]
CGAP (NCI)Hs.495417
Alternative Splicing GalleryENSG00000148308
Gene ExpressionGTF3C5 [ NCBI-GEO ]   GTF3C5 [ EBI - ARRAY_EXPRESS ]   GTF3C5 [ SEEK ]   GTF3C5 [ MEM ]
Gene Expression Viewer (FireBrowse)GTF3C5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9328
GTEX Portal (Tissue expression)GTF3C5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5Q8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5Q8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5Q8
Splice isoforms : SwissVarQ9Y5Q8
PhosPhoSitePlusQ9Y5Q8
Domains : Interpro (EBI)TF_IIIC_su-5   
Domain families : Pfam (Sanger)Tau95 (PF09734)   
Domain families : Pfam (NCBI)pfam09734   
Conserved Domain (NCBI)GTF3C5
DMDM Disease mutations9328
Blocks (Seattle)GTF3C5
SuperfamilyQ9Y5Q8
Human Protein AtlasENSG00000148308
Peptide AtlasQ9Y5Q8
HPRD16077
IPIIPI00844182   IPI00411531   IPI00879210   IPI00641212   IPI00514820   IPI00748216   IPI00940853   IPI00644076   IPI00514436   IPI00642443   IPI00871523   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5Q8
IntAct (EBI)Q9Y5Q8
FunCoupENSG00000148308
BioGRIDGTF3C5
STRING (EMBL)GTF3C5
ZODIACGTF3C5
Ontologies - Pathways
QuickGOQ9Y5Q8
Ontology : AmiGOtranscription factor TFIIIC complex  DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  transcription from RNA polymerase III promoter  transcription from RNA polymerase III promoter  gene expression  skeletal muscle cell differentiation  5S class rRNA transcription from RNA polymerase III type 1 promoter  tRNA transcription from RNA polymerase III promoter  
Ontology : EGO-EBItranscription factor TFIIIC complex  DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  transcription from RNA polymerase III promoter  transcription from RNA polymerase III promoter  gene expression  skeletal muscle cell differentiation  5S class rRNA transcription from RNA polymerase III type 1 promoter  tRNA transcription from RNA polymerase III promoter  
Pathways : BIOCARTARNA polymerase III transcription [Genes]   
NDEx NetworkGTF3C5
Atlas of Cancer Signalling NetworkGTF3C5
Wikipedia pathwaysGTF3C5
Orthology - Evolution
OrthoDB9328
GeneTree (enSembl)ENSG00000148308
Phylogenetic Trees/Animal Genes : TreeFamGTF3C5
HOVERGENQ9Y5Q8
HOGENOMQ9Y5Q8
Homologs : HomoloGeneGTF3C5
Homology/Alignments : Family Browser (UCSC)GTF3C5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF3C5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF3C5
dbVarGTF3C5
ClinVarGTF3C5
1000_GenomesGTF3C5 
Exome Variant ServerGTF3C5
ExAC (Exome Aggregation Consortium)GTF3C5 (select the gene name)
Genetic variants : HAPMAP9328
Genomic Variants (DGV)GTF3C5 [DGVbeta]
DECIPHER (Syndromes)9:135906062-135933890  ENSG00000148308
CONAN: Copy Number AnalysisGTF3C5 
Mutations
ICGC Data PortalGTF3C5 
TCGA Data PortalGTF3C5 
Broad Tumor PortalGTF3C5
OASIS PortalGTF3C5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF3C5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF3C5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF3C5
DgiDB (Drug Gene Interaction Database)GTF3C5
DoCM (Curated mutations)GTF3C5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF3C5 (select a term)
intoGenGTF3C5
Cancer3DGTF3C5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604890   
Orphanet
MedgenGTF3C5
Genetic Testing Registry GTF3C5
NextProtQ9Y5Q8 [Medical]
TSGene9328
GENETestsGTF3C5
Huge Navigator GTF3C5 [HugePedia]
snp3D : Map Gene to Disease9328
BioCentury BCIQGTF3C5
ClinGenGTF3C5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9328
Chemical/Pharm GKB GenePA29056
Clinical trialGTF3C5
Miscellaneous
canSAR (ICR)GTF3C5 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF3C5
EVEXGTF3C5
GoPubMedGTF3C5
iHOPGTF3C5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:09 CET 2017

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