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GTF3C6 (general transcription factor IIIC subunit 6)

Identity

Alias_namesC6orf51
chromosome 6 open reading frame 51
general transcription factor IIIC, polypeptide 6, alpha 35kDa
Alias_symbol (synonym)bA397G5.3
TFIIIC35
Other alias
HGNC (Hugo) GTF3C6
LocusID (NCBI) 112495
Atlas_Id 64100
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 110958560 and ends at 110967888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTTN (11q13.3) / GTF3C6 (6q21)FLNA (Xq28) / GTF3C6 (6q21)GTF3C6 (6q21) / LACE1 (6q21)
GTF3C6 (6q21) / RNF40 (16p11.2)RPF2 (6q21) / GTF3C6 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTF3C6   20872
Cards
Entrez_Gene (NCBI)GTF3C6  112495  general transcription factor IIIC subunit 6
AliasesC6orf51; TFIIIC35; bA397G5.3
GeneCards (Weizmann)GTF3C6
Ensembl hg19 (Hinxton)ENSG00000155115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155115 [Gene_View]  ENSG00000155115 [Sequence]  chr6:110958560-110967888 [Contig_View]  GTF3C6 [Vega]
ICGC DataPortalENSG00000155115
TCGA cBioPortalGTF3C6
AceView (NCBI)GTF3C6
Genatlas (Paris)GTF3C6
WikiGenes112495
SOURCE (Princeton)GTF3C6
Genetics Home Reference (NIH)GTF3C6
Genomic and cartography
GoldenPath hg38 (UCSC)GTF3C6  -     chr6:110958560-110967888 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTF3C6  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblGTF3C6 - 6q21 [CytoView hg19]  GTF3C6 - 6q21 [CytoView hg38]
Mapping of homologs : NCBIGTF3C6 [Mapview hg19]  GTF3C6 [Mapview hg38]
OMIM611784   
Gene and transcription
Genbank (Entrez)AF361492 AF361496 AK057977 BC011593 BC104655
RefSeq transcript (Entrez)NM_138408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTF3C6
Cluster EST : UnigeneHs.418520 [ NCBI ]
CGAP (NCI)Hs.418520
Alternative Splicing GalleryENSG00000155115
Gene ExpressionGTF3C6 [ NCBI-GEO ]   GTF3C6 [ EBI - ARRAY_EXPRESS ]   GTF3C6 [ SEEK ]   GTF3C6 [ MEM ]
Gene Expression Viewer (FireBrowse)GTF3C6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112495
GTEX Portal (Tissue expression)GTF3C6
Human Protein AtlasENSG00000155115-GTF3C6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969F1
Splice isoforms : SwissVarQ969F1
PhosPhoSitePlusQ969F1
Domains : Interpro (EBI)TFIIIC_tau55-rel   
Domain families : Pfam (Sanger)TFIIIC_sub6 (PF10419)   
Domain families : Pfam (NCBI)pfam10419   
Conserved Domain (NCBI)GTF3C6
DMDM Disease mutations112495
Blocks (Seattle)GTF3C6
SuperfamilyQ969F1
Human Protein Atlas [tissue]ENSG00000155115-GTF3C6 [tissue]
Peptide AtlasQ969F1
HPRD12886
IPIIPI00056318   
Protein Interaction databases
DIP (DOE-UCLA)Q969F1
IntAct (EBI)Q969F1
FunCoupENSG00000155115
BioGRIDGTF3C6
STRING (EMBL)GTF3C6
ZODIACGTF3C6
Ontologies - Pathways
QuickGOQ969F1
Ontology : AmiGO###############################################################################################################################################################################################################################################################                    
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                    
NDEx NetworkGTF3C6
Atlas of Cancer Signalling NetworkGTF3C6
Wikipedia pathwaysGTF3C6
Orthology - Evolution
OrthoDB112495
GeneTree (enSembl)ENSG00000155115
Phylogenetic Trees/Animal Genes : TreeFamGTF3C6
HOVERGENQ969F1
HOGENOMQ969F1
Homologs : HomoloGeneGTF3C6
Homology/Alignments : Family Browser (UCSC)GTF3C6
Gene fusions - Rearrangements
Fusion : QuiverGTF3C6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTF3C6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTF3C6
dbVarGTF3C6
ClinVarGTF3C6
1000_GenomesGTF3C6 
Exome Variant ServerGTF3C6
ExAC (Exome Aggregation Consortium)ENSG00000155115
GNOMAD BrowserENSG00000155115
Varsome BrowserGTF3C6
Genetic variants : HAPMAP112495
Genomic Variants (DGV)GTF3C6 [DGVbeta]
DECIPHERGTF3C6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTF3C6 
Mutations
ICGC Data PortalGTF3C6 
TCGA Data PortalGTF3C6 
Broad Tumor PortalGTF3C6
OASIS PortalGTF3C6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTF3C6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTF3C6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTF3C6
DgiDB (Drug Gene Interaction Database)GTF3C6
DoCM (Curated mutations)GTF3C6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTF3C6 (select a term)
intoGenGTF3C6
Cancer3DGTF3C6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611784   
Orphanet
DisGeNETGTF3C6
MedgenGTF3C6
Genetic Testing Registry GTF3C6
NextProtQ969F1 [Medical]
TSGene112495
GENETestsGTF3C6
Target ValidationGTF3C6
Huge Navigator GTF3C6 [HugePedia]
snp3D : Map Gene to Disease112495
BioCentury BCIQGTF3C6
ClinGenGTF3C6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112495
Chemical/Pharm GKB GenePA162390481
Clinical trialGTF3C6
Miscellaneous
canSAR (ICR)GTF3C6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTF3C6
EVEXGTF3C6
GoPubMedGTF3C6
iHOPGTF3C6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:48:17 CEST 2018

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