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GTPBP6 (GTP binding protein 6 (putative))

Identity

Alias_symbol (synonym)PGPL
FLJ20977
Other alias
HGNC (Hugo) GTPBP6
LocusID (NCBI) 8225
Atlas_Id 64105
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 221417 and ends at 230887 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GTPBP6 (Xp22.33) / MIR548N (2q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTPBP6   30189
Cards
Entrez_Gene (NCBI)GTPBP6  8225  GTP binding protein 6 (putative)
AliasesPGPL
GeneCards (Weizmann)GTPBP6
Ensembl hg19 (Hinxton)ENSG00000178605 [Gene_View]  chrX:221417-230887 [Contig_View]  GTPBP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178605 [Gene_View]  chrX:221417-230887 [Contig_View]  GTPBP6 [Vega]
ICGC DataPortalENSG00000178605
TCGA cBioPortalGTPBP6
AceView (NCBI)GTPBP6
Genatlas (Paris)GTPBP6
WikiGenes8225
SOURCE (Princeton)GTPBP6
Genetics Home Reference (NIH)GTPBP6
Genomic and cartography
GoldenPath hg19 (UCSC)GTPBP6  -     chrX:221417-230887 -  Xp22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GTPBP6  -     Xp22.33   [Description]    (hg38-Dec_2013)
EnsemblGTPBP6 - Xp22.33 [CytoView hg19]  GTPBP6 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIGTPBP6 [Mapview hg19]  GTPBP6 [Mapview hg38]
OMIM300124   
Gene and transcription
Genbank (Entrez)AK024630 AK026462 AK074528 AK097872 AK223412
RefSeq transcript (Entrez)NM_012227
RefSeq genomic (Entrez)NC_000023 NC_000024 NC_018934 NG_034126 NT_167201 NT_187358 NW_004929433
Consensus coding sequences : CCDS (NCBI)GTPBP6
Cluster EST : UnigeneHs.437145 [ NCBI ]
CGAP (NCI)Hs.437145
Alternative Splicing GalleryENSG00000178605
Gene ExpressionGTPBP6 [ NCBI-GEO ]   GTPBP6 [ EBI - ARRAY_EXPRESS ]   GTPBP6 [ SEEK ]   GTPBP6 [ MEM ]
Gene Expression Viewer (FireBrowse)GTPBP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8225
GTEX Portal (Tissue expression)GTPBP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43824   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43824  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43824
Splice isoforms : SwissVarO43824
PhosPhoSitePlusO43824
Domaine pattern : Prosite (Expaxy)G_HFLX (PS51705)   
Domains : Interpro (EBI)G_HFLX_dom    GTP_binding_domain    GTPase_HflX    P-loop_NTPase   
Domain families : Pfam (Sanger)MMR_HSR1 (PF01926)   
Domain families : Pfam (NCBI)pfam01926   
Conserved Domain (NCBI)GTPBP6
DMDM Disease mutations8225
Blocks (Seattle)GTPBP6
SuperfamilyO43824
Human Protein AtlasENSG00000178605
Peptide AtlasO43824
HPRD02128
IPIIPI00016763   
Protein Interaction databases
DIP (DOE-UCLA)O43824
IntAct (EBI)O43824
FunCoupENSG00000178605
BioGRIDGTPBP6
STRING (EMBL)GTPBP6
ZODIACGTPBP6
Ontologies - Pathways
QuickGOO43824
Ontology : AmiGOGTP binding  metal ion binding  
Ontology : EGO-EBIGTP binding  metal ion binding  
NDEx NetworkGTPBP6
Atlas of Cancer Signalling NetworkGTPBP6
Wikipedia pathwaysGTPBP6
Orthology - Evolution
OrthoDB8225
GeneTree (enSembl)ENSG00000178605
Phylogenetic Trees/Animal Genes : TreeFamGTPBP6
HOVERGENO43824
HOGENOMO43824
Homologs : HomoloGeneGTPBP6
Homology/Alignments : Family Browser (UCSC)GTPBP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTPBP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTPBP6
dbVarGTPBP6
ClinVarGTPBP6
1000_GenomesGTPBP6 
Exome Variant ServerGTPBP6
ExAC (Exome Aggregation Consortium)GTPBP6 (select the gene name)
Genetic variants : HAPMAP8225
Genomic Variants (DGV)GTPBP6 [DGVbeta]
DECIPHER (Syndromes)X:221417-230887  ENSG00000178605
CONAN: Copy Number AnalysisGTPBP6 
Mutations
ICGC Data PortalGTPBP6 
TCGA Data PortalGTPBP6 
Broad Tumor PortalGTPBP6
OASIS PortalGTPBP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTPBP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTPBP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GTPBP6
DgiDB (Drug Gene Interaction Database)GTPBP6
DoCM (Curated mutations)GTPBP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTPBP6 (select a term)
intoGenGTPBP6
Cancer3DGTPBP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300124   
Orphanet
MedgenGTPBP6
Genetic Testing Registry GTPBP6
NextProtO43824 [Medical]
TSGene8225
GENETestsGTPBP6
Huge Navigator GTPBP6 [HugePedia]
snp3D : Map Gene to Disease8225
BioCentury BCIQGTPBP6
ClinGenGTPBP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8225
Chemical/Pharm GKB GenePA128394538
Clinical trialGTPBP6
Miscellaneous
canSAR (ICR)GTPBP6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTPBP6
EVEXGTPBP6
GoPubMedGTPBP6
iHOPGTPBP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:10 CET 2017

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