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GTSCR1 (Gilles de la Tourette syndrome chromosome region, candidate 1)

Identity

Alias_namesGilles de la Tourette syndrome chromosome region, candidate 1
Other alias-
HGNC (Hugo) GTSCR1
LocusID (NCBI) 220158
Atlas_Id 64107
Location 18q22.2  [Link to chromosome band 18q22]
Location_base_pair Starts at 70630519 and ends at 70650857 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTSCR1   18406
Cards
Entrez_Gene (NCBI)GTSCR1  220158  Gilles de la Tourette syndrome chromosome region, candidate 1
Aliases
GeneCards (Weizmann)GTSCR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:70630519-70650857 [Contig_View]  GTSCR1 [Vega]
TCGA cBioPortalGTSCR1
AceView (NCBI)GTSCR1
Genatlas (Paris)GTSCR1
WikiGenes220158
SOURCE (Princeton)GTSCR1
Genetics Home Reference (NIH)GTSCR1
Genomic and cartography
GoldenPath hg38 (UCSC)GTSCR1  -     chr18:70630519-70650857 -  18q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTSCR1  -     18q22.2   [Description]    (hg19-Feb_2009)
EnsemblGTSCR1 - 18q22.2 [CytoView hg19]  GTSCR1 - 18q22.2 [CytoView hg38]
Mapping of homologs : NCBIGTSCR1 [Mapview hg19]  GTSCR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW082319 AY262164
RefSeq transcript (Entrez)NM_001278515 NM_178506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTSCR1
Cluster EST : UnigeneHs.448217 [ NCBI ]
CGAP (NCI)Hs.448217
Gene ExpressionGTSCR1 [ NCBI-GEO ]   GTSCR1 [ EBI - ARRAY_EXPRESS ]   GTSCR1 [ SEEK ]   GTSCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)GTSCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220158
GTEX Portal (Tissue expression)GTSCR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UQ5
Splice isoforms : SwissVarQ86UQ5
PhosPhoSitePlusQ86UQ5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GTSCR1
DMDM Disease mutations220158
Blocks (Seattle)GTSCR1
SuperfamilyQ86UQ5
Peptide AtlasQ86UQ5
IPIIPI00384229   
Protein Interaction databases
DIP (DOE-UCLA)Q86UQ5
IntAct (EBI)Q86UQ5
BioGRIDGTSCR1
STRING (EMBL)GTSCR1
ZODIACGTSCR1
Ontologies - Pathways
QuickGOQ86UQ5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkGTSCR1
Atlas of Cancer Signalling NetworkGTSCR1
Wikipedia pathwaysGTSCR1
Orthology - Evolution
OrthoDB220158
Phylogenetic Trees/Animal Genes : TreeFamGTSCR1
HOVERGENQ86UQ5
HOGENOMQ86UQ5
Homologs : HomoloGeneGTSCR1
Homology/Alignments : Family Browser (UCSC)GTSCR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTSCR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTSCR1
dbVarGTSCR1
ClinVarGTSCR1
1000_GenomesGTSCR1 
Exome Variant ServerGTSCR1
ExAC (Exome Aggregation Consortium)GTSCR1 (select the gene name)
Genetic variants : HAPMAP220158
Genomic Variants (DGV)GTSCR1 [DGVbeta]
DECIPHERGTSCR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTSCR1 
Mutations
ICGC Data PortalGTSCR1 
TCGA Data PortalGTSCR1 
Broad Tumor PortalGTSCR1
OASIS PortalGTSCR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGTSCR1
BioMutasearch GTSCR1
DgiDB (Drug Gene Interaction Database)GTSCR1
DoCM (Curated mutations)GTSCR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTSCR1 (select a term)
intoGenGTSCR1
Cancer3DGTSCR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGTSCR1
Genetic Testing Registry GTSCR1
NextProtQ86UQ5 [Medical]
TSGene220158
GENETestsGTSCR1
Target ValidationGTSCR1
Huge Navigator GTSCR1 [HugePedia]
snp3D : Map Gene to Disease220158
BioCentury BCIQGTSCR1
ClinGenGTSCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220158
Chemical/Pharm GKB GenePA134887935
Clinical trialGTSCR1
Miscellaneous
canSAR (ICR)GTSCR1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTSCR1
EVEXGTSCR1
GoPubMedGTSCR1
iHOPGTSCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:44 CEST 2017

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