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GTSE1 (G2 and S-phase expressed 1)

Identity

Alias_namesG-2 and S-phase expressed 1
Alias_symbol (synonym)GTSE-1
B99
Other alias
HGNC (Hugo) GTSE1
LocusID (NCBI) 51512
Atlas_Id 40782
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 46692638 and ends at 46726707 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF3E (8q23.1) / GTSE1 (22q13.31)GRAMD4 (22q13.31) / GTSE1 (22q13.31)GTSE1 (22q13.31) / ATXN10 (22q13.31)
GTSE1 22q13.31 / ATXN10 22q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTSE1   13698
Cards
Entrez_Gene (NCBI)GTSE1  51512  G2 and S-phase expressed 1
AliasesB99
GeneCards (Weizmann)GTSE1
Ensembl hg19 (Hinxton)ENSG00000075218 [Gene_View]  chr22:46692638-46726707 [Contig_View]  GTSE1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000075218 [Gene_View]  chr22:46692638-46726707 [Contig_View]  GTSE1 [Vega]
ICGC DataPortalENSG00000075218
TCGA cBioPortalGTSE1
AceView (NCBI)GTSE1
Genatlas (Paris)GTSE1
WikiGenes51512
SOURCE (Princeton)GTSE1
Genetics Home Reference (NIH)GTSE1
Genomic and cartography
GoldenPath hg19 (UCSC)GTSE1  -     chr22:46692638-46726707 +  22q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GTSE1  -     22q13.31   [Description]    (hg38-Dec_2013)
EnsemblGTSE1 - 22q13.31 [CytoView hg19]  GTSE1 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBIGTSE1 [Mapview hg19]  GTSE1 [Mapview hg38]
OMIM607477   
Gene and transcription
Genbank (Entrez)AF223408 AK025563 AK222806 AK303087 AK315550
RefSeq transcript (Entrez)NM_016426
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)GTSE1
Cluster EST : UnigeneHs.439524 [ NCBI ]
CGAP (NCI)Hs.439524
Alternative Splicing GalleryENSG00000075218
Gene ExpressionGTSE1 [ NCBI-GEO ]   GTSE1 [ EBI - ARRAY_EXPRESS ]   GTSE1 [ SEEK ]   GTSE1 [ MEM ]
Gene Expression Viewer (FireBrowse)GTSE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51512
GTEX Portal (Tissue expression)GTSE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYZ3
Splice isoforms : SwissVarQ9NYZ3
PhosPhoSitePlusQ9NYZ3
Domains : Interpro (EBI)DDA3/GTSE-1    GTSE1    GTSE1_N   
Domain families : Pfam (Sanger)GTSE1_N (PF15259)   
Domain families : Pfam (NCBI)pfam15259   
Conserved Domain (NCBI)GTSE1
DMDM Disease mutations51512
Blocks (Seattle)GTSE1
SuperfamilyQ9NYZ3
Human Protein AtlasENSG00000075218
Peptide AtlasQ9NYZ3
HPRD09593
IPIIPI00871779   IPI00160901   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYZ3
IntAct (EBI)Q9NYZ3
FunCoupENSG00000075218
BioGRIDGTSE1
STRING (EMBL)GTSE1
ZODIACGTSE1
Ontologies - Pathways
QuickGOQ9NYZ3
Ontology : AmiGOmolecular_function  protein binding  nucleoplasm  cytosol  cytoplasmic microtubule  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  microtubule-based process  membrane  positive regulation of cell migration  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of protein export from nucleus  protein stabilization  positive regulation of protein localization to nucleus  regulation of cell cycle G2/M phase transition  negative regulation of microtubule binding  
Ontology : EGO-EBImolecular_function  protein binding  nucleoplasm  cytosol  cytoplasmic microtubule  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  microtubule-based process  membrane  positive regulation of cell migration  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of protein export from nucleus  protein stabilization  positive regulation of protein localization to nucleus  regulation of cell cycle G2/M phase transition  negative regulation of microtubule binding  
Pathways : KEGGp53 signaling pathway   
NDEx NetworkGTSE1
Atlas of Cancer Signalling NetworkGTSE1
Wikipedia pathwaysGTSE1
Orthology - Evolution
OrthoDB51512
GeneTree (enSembl)ENSG00000075218
Phylogenetic Trees/Animal Genes : TreeFamGTSE1
HOVERGENQ9NYZ3
HOGENOMQ9NYZ3
Homologs : HomoloGeneGTSE1
Homology/Alignments : Family Browser (UCSC)GTSE1
Gene fusions - Rearrangements
Fusion : MitelmanGTSE1/ATXN10 [22q13.31/22q13.31]  
Fusion: TCGAGTSE1 22q13.31 ATXN10 22q13.31 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTSE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTSE1
dbVarGTSE1
ClinVarGTSE1
1000_GenomesGTSE1 
Exome Variant ServerGTSE1
ExAC (Exome Aggregation Consortium)GTSE1 (select the gene name)
Genetic variants : HAPMAP51512
Genomic Variants (DGV)GTSE1 [DGVbeta]
DECIPHER (Syndromes)22:46692638-46726707  ENSG00000075218
CONAN: Copy Number AnalysisGTSE1 
Mutations
ICGC Data PortalGTSE1 
TCGA Data PortalGTSE1 
Broad Tumor PortalGTSE1
OASIS PortalGTSE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTSE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTSE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTSE1
DgiDB (Drug Gene Interaction Database)GTSE1
DoCM (Curated mutations)GTSE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTSE1 (select a term)
intoGenGTSE1
Cancer3DGTSE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607477   
Orphanet
MedgenGTSE1
Genetic Testing Registry GTSE1
NextProtQ9NYZ3 [Medical]
TSGene51512
GENETestsGTSE1
Huge Navigator GTSE1 [HugePedia]
snp3D : Map Gene to Disease51512
BioCentury BCIQGTSE1
ClinGenGTSE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51512
Chemical/Pharm GKB GenePA29061
Clinical trialGTSE1
Miscellaneous
canSAR (ICR)GTSE1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTSE1
EVEXGTSE1
GoPubMedGTSE1
iHOPGTSE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:03:15 CEST 2017

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