Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GTSF1 (gametocyte specific factor 1)

Identity

Alias_namesFAM112B
family with sequence similarity 112
Alias_symbol (synonym)FLJ32942
Other alias
HGNC (Hugo) GTSF1
LocusID (NCBI) 121355
Atlas_Id 55399
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 54455952 and ends at 54473602 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GTSF1 (12q13.13) / TGOLN2 (2p11.2)ITGA5 (12q13.13) / GTSF1 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTSF1   26565
Cards
Entrez_Gene (NCBI)GTSF1  121355  gametocyte specific factor 1
AliasesFAM112B
GeneCards (Weizmann)GTSF1
Ensembl hg19 (Hinxton)ENSG00000170627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170627 [Gene_View]  chr12:54455952-54473602 [Contig_View]  GTSF1 [Vega]
ICGC DataPortalENSG00000170627
TCGA cBioPortalGTSF1
AceView (NCBI)GTSF1
Genatlas (Paris)GTSF1
WikiGenes121355
SOURCE (Princeton)GTSF1
Genetics Home Reference (NIH)GTSF1
Genomic and cartography
GoldenPath hg38 (UCSC)GTSF1  -     chr12:54455952-54473602 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTSF1  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblGTSF1 - 12q13.13 [CytoView hg19]  GTSF1 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIGTSF1 [Mapview hg19]  GTSF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057504 AK098819 BC021179 BC105587 BE503352
RefSeq transcript (Entrez)NM_144594
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTSF1
Cluster EST : UnigeneHs.524476 [ NCBI ]
CGAP (NCI)Hs.524476
Alternative Splicing GalleryENSG00000170627
Gene ExpressionGTSF1 [ NCBI-GEO ]   GTSF1 [ EBI - ARRAY_EXPRESS ]   GTSF1 [ SEEK ]   GTSF1 [ MEM ]
Gene Expression Viewer (FireBrowse)GTSF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121355
GTEX Portal (Tissue expression)GTSF1
Human Protein AtlasENSG00000170627-GTSF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW33
Splice isoforms : SwissVarQ8WW33
PhosPhoSitePlusQ8WW33
Domaine pattern : Prosite (Expaxy)ZF_CHHC_U11_48K (PS51800)   
Domains : Interpro (EBI)GTSF1_vertebrate    TRM13/UPF0224_CHHC_Znf_dom   
Domain families : Pfam (Sanger)zf-U11-48K (PF05253)   
Domain families : Pfam (NCBI)pfam05253   
Conserved Domain (NCBI)GTSF1
DMDM Disease mutations121355
Blocks (Seattle)GTSF1
SuperfamilyQ8WW33
Human Protein Atlas [tissue]ENSG00000170627-GTSF1 [tissue]
Peptide AtlasQ8WW33
HPRD08150
IPIIPI00218505   IPI01021882   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW33
IntAct (EBI)Q8WW33
FunCoupENSG00000170627
BioGRIDGTSF1
STRING (EMBL)GTSF1
ZODIACGTSF1
Ontologies - Pathways
QuickGOQ8WW33
Ontology : AmiGOnucleic acid binding  cytoplasm  spermatogenesis  cell differentiation  metal ion binding  
Ontology : EGO-EBInucleic acid binding  cytoplasm  spermatogenesis  cell differentiation  metal ion binding  
NDEx NetworkGTSF1
Atlas of Cancer Signalling NetworkGTSF1
Wikipedia pathwaysGTSF1
Orthology - Evolution
OrthoDB121355
GeneTree (enSembl)ENSG00000170627
Phylogenetic Trees/Animal Genes : TreeFamGTSF1
HOVERGENQ8WW33
HOGENOMQ8WW33
Homologs : HomoloGeneGTSF1
Homology/Alignments : Family Browser (UCSC)GTSF1
Gene fusions - Rearrangements
Tumor Fusion PortalGTSF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTSF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTSF1
dbVarGTSF1
ClinVarGTSF1
1000_GenomesGTSF1 
Exome Variant ServerGTSF1
ExAC (Exome Aggregation Consortium)ENSG00000170627
GNOMAD BrowserENSG00000170627
Genetic variants : HAPMAP121355
Genomic Variants (DGV)GTSF1 [DGVbeta]
DECIPHERGTSF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTSF1 
Mutations
ICGC Data PortalGTSF1 
TCGA Data PortalGTSF1 
Broad Tumor PortalGTSF1
OASIS PortalGTSF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTSF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTSF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTSF1
DgiDB (Drug Gene Interaction Database)GTSF1
DoCM (Curated mutations)GTSF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTSF1 (select a term)
intoGenGTSF1
Cancer3DGTSF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGTSF1
MedgenGTSF1
Genetic Testing Registry GTSF1
NextProtQ8WW33 [Medical]
TSGene121355
GENETestsGTSF1
Target ValidationGTSF1
Huge Navigator GTSF1 [HugePedia]
snp3D : Map Gene to Disease121355
BioCentury BCIQGTSF1
ClinGenGTSF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121355
Chemical/Pharm GKB GenePA162390507
Clinical trialGTSF1
Miscellaneous
canSAR (ICR)GTSF1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTSF1
EVEXGTSF1
GoPubMedGTSF1
iHOPGTSF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:15:35 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.