Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GTSF1L (gametocyte specific factor 1 like)

Identity

Alias_namesC20orf65
FAM112A
chromosome 20 open reading frame 65
family with sequence similarity 112, member A
Alias_symbol (synonym)dJ1028D15.4
Other alias
HGNC (Hugo) GTSF1L
LocusID (NCBI) 149699
Atlas_Id 64110
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 43726161 and ends at 43727002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GTSF1L   16198
Cards
Entrez_Gene (NCBI)GTSF1L  149699  gametocyte specific factor 1 like
AliasesC20orf65; FAM112A; dJ1028D15.4
GeneCards (Weizmann)GTSF1L
Ensembl hg19 (Hinxton)ENSG00000124196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124196 [Gene_View]  chr20:43726161-43727002 [Contig_View]  GTSF1L [Vega]
ICGC DataPortalENSG00000124196
TCGA cBioPortalGTSF1L
AceView (NCBI)GTSF1L
Genatlas (Paris)GTSF1L
WikiGenes149699
SOURCE (Princeton)GTSF1L
Genetics Home Reference (NIH)GTSF1L
Genomic and cartography
GoldenPath hg38 (UCSC)GTSF1L  -     chr20:43726161-43727002 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GTSF1L  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblGTSF1L - 20q13.12 [CytoView hg19]  GTSF1L - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIGTSF1L [Mapview hg19]  GTSF1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA723626 AA813527 AK058060 BC040049 BQ428678
RefSeq transcript (Entrez)NM_001008901 NM_176791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GTSF1L
Cluster EST : UnigeneHs.710523 [ NCBI ]
CGAP (NCI)Hs.710523
Alternative Splicing GalleryENSG00000124196
Gene ExpressionGTSF1L [ NCBI-GEO ]   GTSF1L [ EBI - ARRAY_EXPRESS ]   GTSF1L [ SEEK ]   GTSF1L [ MEM ]
Gene Expression Viewer (FireBrowse)GTSF1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149699
GTEX Portal (Tissue expression)GTSF1L
Human Protein AtlasENSG00000124196-GTSF1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1H1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1H1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1H1
Splice isoforms : SwissVarQ9H1H1
PhosPhoSitePlusQ9H1H1
Domaine pattern : Prosite (Expaxy)ZF_CHHC_U11_48K (PS51800)   
Domains : Interpro (EBI)GTSF1L    TRM13/UPF0224_CHHC_Znf_dom   
Domain families : Pfam (Sanger)zf-U11-48K (PF05253)   
Domain families : Pfam (NCBI)pfam05253   
Conserved Domain (NCBI)GTSF1L
DMDM Disease mutations149699
Blocks (Seattle)GTSF1L
SuperfamilyQ9H1H1
Human Protein Atlas [tissue]ENSG00000124196-GTSF1L [tissue]
Peptide AtlasQ9H1H1
HPRD12778
IPIIPI00011737   IPI00551056   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1H1
IntAct (EBI)Q9H1H1
FunCoupENSG00000124196
BioGRIDGTSF1L
STRING (EMBL)GTSF1L
ZODIACGTSF1L
Ontologies - Pathways
QuickGOQ9H1H1
Ontology : AmiGOnucleic acid binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  metal ion binding  
NDEx NetworkGTSF1L
Atlas of Cancer Signalling NetworkGTSF1L
Wikipedia pathwaysGTSF1L
Orthology - Evolution
OrthoDB149699
GeneTree (enSembl)ENSG00000124196
Phylogenetic Trees/Animal Genes : TreeFamGTSF1L
HOVERGENQ9H1H1
HOGENOMQ9H1H1
Homologs : HomoloGeneGTSF1L
Homology/Alignments : Family Browser (UCSC)GTSF1L
Gene fusions - Rearrangements
Tumor Fusion PortalGTSF1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGTSF1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GTSF1L
dbVarGTSF1L
ClinVarGTSF1L
1000_GenomesGTSF1L 
Exome Variant ServerGTSF1L
ExAC (Exome Aggregation Consortium)ENSG00000124196
GNOMAD BrowserENSG00000124196
Genetic variants : HAPMAP149699
Genomic Variants (DGV)GTSF1L [DGVbeta]
DECIPHERGTSF1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGTSF1L 
Mutations
ICGC Data PortalGTSF1L 
TCGA Data PortalGTSF1L 
Broad Tumor PortalGTSF1L
OASIS PortalGTSF1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGTSF1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGTSF1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GTSF1L
DgiDB (Drug Gene Interaction Database)GTSF1L
DoCM (Curated mutations)GTSF1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GTSF1L (select a term)
intoGenGTSF1L
Cancer3DGTSF1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGTSF1L
MedgenGTSF1L
Genetic Testing Registry GTSF1L
NextProtQ9H1H1 [Medical]
TSGene149699
GENETestsGTSF1L
Target ValidationGTSF1L
Huge Navigator GTSF1L [HugePedia]
snp3D : Map Gene to Disease149699
BioCentury BCIQGTSF1L
ClinGenGTSF1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149699
Chemical/Pharm GKB GenePA25775
Clinical trialGTSF1L
Miscellaneous
canSAR (ICR)GTSF1L (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGTSF1L
EVEXGTSF1L
GoPubMedGTSF1L
iHOPGTSF1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:32 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.