Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GUCD1 (guanylyl cyclase domain containing 1)

Identity

Alias_namesC22orf13
chromosome 22 open reading frame 13
Alias_symbol (synonym)MGC1842
LLN4
Other alias
HGNC (Hugo) GUCD1
LocusID (NCBI) 83606
Atlas_Id 64114
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 24936391 and ends at 24951903 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MPDU1 (17p13.1) / GUCD1 (22q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GUCD1   14237
Cards
Entrez_Gene (NCBI)GUCD1  83606  guanylyl cyclase domain containing 1
AliasesC22orf13; LLN4
GeneCards (Weizmann)GUCD1
Ensembl hg19 (Hinxton)ENSG00000138867 [Gene_View]  chr22:24936391-24951903 [Contig_View]  GUCD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138867 [Gene_View]  chr22:24936391-24951903 [Contig_View]  GUCD1 [Vega]
ICGC DataPortalENSG00000138867
TCGA cBioPortalGUCD1
AceView (NCBI)GUCD1
Genatlas (Paris)GUCD1
WikiGenes83606
SOURCE (Princeton)GUCD1
Genetics Home Reference (NIH)GUCD1
Genomic and cartography
GoldenPath hg19 (UCSC)GUCD1  -     chr22:24936391-24951903 -  22q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GUCD1  -     22q11.23   [Description]    (hg38-Dec_2013)
EnsemblGUCD1 - 22q11.23 [CytoView hg19]  GUCD1 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIGUCD1 [Mapview hg19]  GUCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024723 AK025242 AK054681 AK098754 AK294972
RefSeq transcript (Entrez)NM_001284251 NM_001284252 NM_001284253 NM_001284254 NM_001284255 NM_001284256 NM_001284257 NM_031444
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)GUCD1
Cluster EST : UnigeneHs.9850 [ NCBI ]
CGAP (NCI)Hs.9850
Alternative Splicing GalleryENSG00000138867
Gene ExpressionGUCD1 [ NCBI-GEO ]   GUCD1 [ EBI - ARRAY_EXPRESS ]   GUCD1 [ SEEK ]   GUCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)GUCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83606
GTEX Portal (Tissue expression)GUCD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NT3
Splice isoforms : SwissVarQ96NT3
PhosPhoSitePlusQ96NT3
Domains : Interpro (EBI)Guanylyl_cyclase   
Domain families : Pfam (Sanger)Guanylate_cyc_2 (PF09778)   
Domain families : Pfam (NCBI)pfam09778   
Conserved Domain (NCBI)GUCD1
DMDM Disease mutations83606
Blocks (Seattle)GUCD1
SuperfamilyQ96NT3
Human Protein AtlasENSG00000138867
Peptide AtlasQ96NT3
HPRD12796
IPIIPI00643339   IPI00909374   IPI01017905   IPI00879623   IPI00878983   IPI00385313   IPI00879298   
Protein Interaction databases
DIP (DOE-UCLA)Q96NT3
IntAct (EBI)Q96NT3
FunCoupENSG00000138867
BioGRIDGUCD1
STRING (EMBL)GUCD1
ZODIACGUCD1
Ontologies - Pathways
QuickGOQ96NT3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGUCD1
Atlas of Cancer Signalling NetworkGUCD1
Wikipedia pathwaysGUCD1
Orthology - Evolution
OrthoDB83606
GeneTree (enSembl)ENSG00000138867
Phylogenetic Trees/Animal Genes : TreeFamGUCD1
HOVERGENQ96NT3
HOGENOMQ96NT3
Homologs : HomoloGeneGUCD1
Homology/Alignments : Family Browser (UCSC)GUCD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGUCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GUCD1
dbVarGUCD1
ClinVarGUCD1
1000_GenomesGUCD1 
Exome Variant ServerGUCD1
ExAC (Exome Aggregation Consortium)GUCD1 (select the gene name)
Genetic variants : HAPMAP83606
Genomic Variants (DGV)GUCD1 [DGVbeta]
DECIPHER (Syndromes)22:24936391-24951903  ENSG00000138867
CONAN: Copy Number AnalysisGUCD1 
Mutations
ICGC Data PortalGUCD1 
TCGA Data PortalGUCD1 
Broad Tumor PortalGUCD1
OASIS PortalGUCD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGUCD1
BioMutasearch GUCD1
DgiDB (Drug Gene Interaction Database)GUCD1
DoCM (Curated mutations)GUCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GUCD1 (select a term)
intoGenGUCD1
Cancer3DGUCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGUCD1
Genetic Testing Registry GUCD1
NextProtQ96NT3 [Medical]
TSGene83606
GENETestsGUCD1
Huge Navigator GUCD1 [HugePedia]
snp3D : Map Gene to Disease83606
BioCentury BCIQGUCD1
ClinGenGUCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83606
Chemical/Pharm GKB GenePA25882
Clinical trialGUCD1
Miscellaneous
canSAR (ICR)GUCD1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGUCD1
EVEXGUCD1
GoPubMedGUCD1
iHOPGUCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:07:12 CET 2017

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