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GUCY1B2 (guanylate cyclase 1 soluble subunit beta 2 (pseudogene))

Identity

Alias_namesguanylate cyclase 1, soluble, beta 2
guanylate cyclase 1 solube subunit beta 2 (pseudogene)
Alias_symbol (synonym)GC-SB2
Other alias
HGNC (Hugo) GUCY1B2
LocusID (NCBI) 2974
Atlas_Id 64115
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 50994633 and ends at 51066006 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GUCY1B2   4686
Cards
Entrez_Gene (NCBI)GUCY1B2  2974  guanylate cyclase 1 soluble subunit beta 2 (pseudogene)
AliasesGC-SB2
GeneCards (Weizmann)GUCY1B2
Ensembl hg19 (Hinxton)ENSG00000123201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123201 [Gene_View]  chr13:50994633-51066006 [Contig_View]  GUCY1B2 [Vega]
ICGC DataPortalENSG00000123201
TCGA cBioPortalGUCY1B2
AceView (NCBI)GUCY1B2
Genatlas (Paris)GUCY1B2
WikiGenes2974
SOURCE (Princeton)GUCY1B2
Genetics Home Reference (NIH)GUCY1B2
Genomic and cartography
GoldenPath hg38 (UCSC)GUCY1B2  -     chr13:50994633-51066006 -  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GUCY1B2  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblGUCY1B2 - 13q14.3 [CytoView hg19]  GUCY1B2 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBIGUCY1B2 [Mapview hg19]  GUCY1B2 [Mapview hg38]
OMIM603695   
Gene and transcription
Genbank (Entrez)AF038499 AI247180 AK296746
RefSeq transcript (Entrez)NM_004129
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GUCY1B2
Cluster EST : UnigeneHs.411573 [ NCBI ]
CGAP (NCI)Hs.411573
Alternative Splicing GalleryENSG00000123201
Gene ExpressionGUCY1B2 [ NCBI-GEO ]   GUCY1B2 [ EBI - ARRAY_EXPRESS ]   GUCY1B2 [ SEEK ]   GUCY1B2 [ MEM ]
Gene Expression Viewer (FireBrowse)GUCY1B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2974
GTEX Portal (Tissue expression)GUCY1B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75343   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75343  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75343
Splice isoforms : SwissVarO75343
PhosPhoSitePlusO75343
Domaine pattern : Prosite (Expaxy)GUANYLATE_CYCLASE_1 (PS00452)    GUANYLATE_CYCLASE_2 (PS50125)   
Domains : Interpro (EBI)A/G_cyclase    A/G_cyclase_CS    Heme_NO-bd    HNOB_dom_associated    NO_sig/Golgi_transp_ligand-bd    Nucleotide_cyclase   
Domain families : Pfam (Sanger)Guanylate_cyc (PF00211)    HNOB (PF07700)    HNOBA (PF07701)   
Domain families : Pfam (NCBI)pfam00211    pfam07700    pfam07701   
Domain families : Smart (EMBL)CYCc (SM00044)  
Conserved Domain (NCBI)GUCY1B2
DMDM Disease mutations2974
Blocks (Seattle)GUCY1B2
SuperfamilyO75343
Human Protein AtlasENSG00000123201
Peptide AtlasO75343
HPRD07542
IPIIPI00025279   IPI00965218   
Protein Interaction databases
DIP (DOE-UCLA)O75343
IntAct (EBI)O75343
FunCoupENSG00000123201
BioGRIDGUCY1B2
STRING (EMBL)GUCY1B2
ZODIACGUCY1B2
Ontologies - Pathways
QuickGOO75343
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : BIOCARTAIon Channels and Their Functional Role in Vascular Endothelium [Genes]   
NDEx NetworkGUCY1B2
Atlas of Cancer Signalling NetworkGUCY1B2
Wikipedia pathwaysGUCY1B2
Orthology - Evolution
OrthoDB2974
GeneTree (enSembl)ENSG00000123201
Phylogenetic Trees/Animal Genes : TreeFamGUCY1B2
HOVERGENO75343
HOGENOMO75343
Homologs : HomoloGeneGUCY1B2
Homology/Alignments : Family Browser (UCSC)GUCY1B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGUCY1B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GUCY1B2
dbVarGUCY1B2
ClinVarGUCY1B2
1000_GenomesGUCY1B2 
Exome Variant ServerGUCY1B2
ExAC (Exome Aggregation Consortium)GUCY1B2 (select the gene name)
Genetic variants : HAPMAP2974
Genomic Variants (DGV)GUCY1B2 [DGVbeta]
DECIPHERGUCY1B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGUCY1B2 
Mutations
ICGC Data PortalGUCY1B2 
TCGA Data PortalGUCY1B2 
Broad Tumor PortalGUCY1B2
OASIS PortalGUCY1B2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGUCY1B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GUCY1B2
DgiDB (Drug Gene Interaction Database)GUCY1B2
DoCM (Curated mutations)GUCY1B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GUCY1B2 (select a term)
intoGenGUCY1B2
Cancer3DGUCY1B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603695   
Orphanet
MedgenGUCY1B2
Genetic Testing Registry GUCY1B2
NextProtO75343 [Medical]
TSGene2974
GENETestsGUCY1B2
Target ValidationGUCY1B2
Huge Navigator GUCY1B2 [HugePedia]
snp3D : Map Gene to Disease2974
BioCentury BCIQGUCY1B2
ClinGenGUCY1B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2974
Chemical/Pharm GKB GenePA185
Clinical trialGUCY1B2
Miscellaneous
canSAR (ICR)GUCY1B2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGUCY1B2
EVEXGUCY1B2
GoPubMedGUCY1B2
iHOPGUCY1B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:06 CEST 2017

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