Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GUSBP1 (glucuronidase, beta pseudogene 1)

Identity

Other alias-
HGNC (Hugo) GUSBP1
LocusID (NCBI) 728411
Atlas_Id 64120
Location 5p14.3  [Link to chromosome band 5p14]
Location_base_pair Starts at 21459665 and ends at 21586917 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GUSBP1 (5p14.3) / MAP4 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GUSBP1   13670
Cards
Entrez_Gene (NCBI)GUSBP1  728411  glucuronidase, beta pseudogene 1
Aliases
GeneCards (Weizmann)GUSBP1
Ensembl hg19 (Hinxton)ENSG00000183666 [Gene_View]  chr5:21459665-21586917 [Contig_View]  GUSBP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183666 [Gene_View]  chr5:21459665-21586917 [Contig_View]  GUSBP1 [Vega]
ICGC DataPortalENSG00000183666
TCGA cBioPortalGUSBP1
AceView (NCBI)GUSBP1
Genatlas (Paris)GUSBP1
WikiGenes728411
SOURCE (Princeton)GUSBP1
Genetics Home Reference (NIH)GUSBP1
Genomic and cartography
GoldenPath hg19 (UCSC)GUSBP1  -     chr5:21459665-21586917 +  5p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GUSBP1  -     5p14.3   [Description]    (hg38-Dec_2013)
EnsemblGUSBP1 - 5p14.3 [CytoView hg19]  GUSBP1 - 5p14.3 [CytoView hg38]
Mapping of homologs : NCBIGUSBP1 [Mapview hg19]  GUSBP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095656 AK290693 BC025359 BC038977 BC052307
RefSeq transcript (Entrez)NM_207331
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_008324 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)GUSBP1
Cluster EST : UnigeneHs.88181 [ NCBI ]
CGAP (NCI)Hs.88181
Alternative Splicing GalleryENSG00000183666
Gene ExpressionGUSBP1 [ NCBI-GEO ]   GUSBP1 [ EBI - ARRAY_EXPRESS ]   GUSBP1 [ SEEK ]   GUSBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GUSBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728411
GTEX Portal (Tissue expression)GUSBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15486   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15486  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15486
Splice isoforms : SwissVarQ15486
PhosPhoSitePlusQ15486
Domains : Interpro (EBI)Glyco_hydro_2/20_Ig-like    Glyco_hydro_2_Ig-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GUSBP1
DMDM Disease mutations728411
Blocks (Seattle)GUSBP1
SuperfamilyQ15486
Human Protein AtlasENSG00000183666
Peptide AtlasQ15486
IPIIPI00902849   IPI01018693   
Protein Interaction databases
DIP (DOE-UCLA)Q15486
IntAct (EBI)Q15486
FunCoupENSG00000183666
BioGRIDGUSBP1
STRING (EMBL)GUSBP1
ZODIACGUSBP1
Ontologies - Pathways
QuickGOQ15486
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGUSBP1
Atlas of Cancer Signalling NetworkGUSBP1
Wikipedia pathwaysGUSBP1
Orthology - Evolution
OrthoDB728411
GeneTree (enSembl)ENSG00000183666
Phylogenetic Trees/Animal Genes : TreeFamGUSBP1
HOVERGENQ15486
HOGENOMQ15486
Homologs : HomoloGeneGUSBP1
Homology/Alignments : Family Browser (UCSC)GUSBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGUSBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GUSBP1
dbVarGUSBP1
ClinVarGUSBP1
1000_GenomesGUSBP1 
Exome Variant ServerGUSBP1
ExAC (Exome Aggregation Consortium)GUSBP1 (select the gene name)
Genetic variants : HAPMAP728411
Genomic Variants (DGV)GUSBP1 [DGVbeta]
DECIPHER (Syndromes)5:21459665-21586917  ENSG00000183666
CONAN: Copy Number AnalysisGUSBP1 
Mutations
ICGC Data PortalGUSBP1 
TCGA Data PortalGUSBP1 
Broad Tumor PortalGUSBP1
OASIS PortalGUSBP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGUSBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GUSBP1
DgiDB (Drug Gene Interaction Database)GUSBP1
DoCM (Curated mutations)GUSBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GUSBP1 (select a term)
intoGenGUSBP1
Cancer3DGUSBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGUSBP1
Genetic Testing Registry GUSBP1
NextProtQ15486 [Medical]
TSGene728411
GENETestsGUSBP1
Huge Navigator GUSBP1 [HugePedia]
snp3D : Map Gene to Disease728411
BioCentury BCIQGUSBP1
ClinGenGUSBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728411
Chemical/Pharm GKB GenePA147357981
Clinical trialGUSBP1
Miscellaneous
canSAR (ICR)GUSBP1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGUSBP1
EVEXGUSBP1
GoPubMedGUSBP1
iHOPGUSBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:07:14 CET 2017

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