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GUSBP11 (glucuronidase, beta pseudogene 11)

Identity

Other alias-
HGNC (Hugo) GUSBP11
LocusID (NCBI) 91316
Atlas_Id 64122
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 23638488 and ends at 23717423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GH1 (17q23.3) / GUSBP11 (22q11.23)GUSBP11 (22q11.23) / DSCAML1 (11q23.3)GUSBP11 (22q11.23) / GUSBP11 (22q11.23)
GUSBP11 (22q11.23) / NPIPB7 (16q23.1)GUSBP11 (22q11.23) / PQBP1 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GUSBP11   42325
Cards
Entrez_Gene (NCBI)GUSBP11  91316  glucuronidase, beta pseudogene 11
Aliases
GeneCards (Weizmann)GUSBP11
Ensembl hg19 (Hinxton)ENSG00000228315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228315 [Gene_View]  chr22:23638488-23717423 [Contig_View]  GUSBP11 [Vega]
ICGC DataPortalENSG00000228315
TCGA cBioPortalGUSBP11
AceView (NCBI)GUSBP11
Genatlas (Paris)GUSBP11
WikiGenes91316
SOURCE (Princeton)GUSBP11
Genetics Home Reference (NIH)GUSBP11
Genomic and cartography
GoldenPath hg38 (UCSC)GUSBP11  -     chr22:23638488-23717423 -  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GUSBP11  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblGUSBP11 - 22q11.23 [CytoView hg19]  GUSBP11 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIGUSBP11 [Mapview hg19]  GUSBP11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025313 AK056875 AK091837 AK125808 AK300413
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GUSBP11
Cluster EST : UnigeneHs.148656 [ NCBI ]
CGAP (NCI)Hs.148656
Alternative Splicing GalleryENSG00000228315
Gene ExpressionGUSBP11 [ NCBI-GEO ]   GUSBP11 [ EBI - ARRAY_EXPRESS ]   GUSBP11 [ SEEK ]   GUSBP11 [ MEM ]
Gene Expression Viewer (FireBrowse)GUSBP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91316
GTEX Portal (Tissue expression)GUSBP11
Human Protein AtlasENSG00000228315-GUSBP11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P575   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P575  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P575
Splice isoforms : SwissVarQ6P575
PhosPhoSitePlusQ6P575
Domains : Interpro (EBI)Galactose-bd-like    Glyco_hydro_2_N   
Domain families : Pfam (Sanger)Glyco_hydro_2_N (PF02837)   
Domain families : Pfam (NCBI)pfam02837   
Conserved Domain (NCBI)GUSBP11
DMDM Disease mutations91316
Blocks (Seattle)GUSBP11
SuperfamilyQ6P575
Human Protein Atlas [tissue]ENSG00000228315-GUSBP11 [tissue]
Peptide AtlasQ6P575
Protein Interaction databases
DIP (DOE-UCLA)Q6P575
IntAct (EBI)Q6P575
FunCoupENSG00000228315
BioGRIDGUSBP11
STRING (EMBL)GUSBP11
ZODIACGUSBP11
Ontologies - Pathways
QuickGOQ6P575
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGUSBP11
Atlas of Cancer Signalling NetworkGUSBP11
Wikipedia pathwaysGUSBP11
Orthology - Evolution
OrthoDB91316
GeneTree (enSembl)ENSG00000228315
Phylogenetic Trees/Animal Genes : TreeFamGUSBP11
HOVERGENQ6P575
HOGENOMQ6P575
Homologs : HomoloGeneGUSBP11
Homology/Alignments : Family Browser (UCSC)GUSBP11
Gene fusions - Rearrangements
Tumor Fusion PortalGUSBP11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGUSBP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GUSBP11
dbVarGUSBP11
ClinVarGUSBP11
1000_GenomesGUSBP11 
Exome Variant ServerGUSBP11
ExAC (Exome Aggregation Consortium)ENSG00000228315
GNOMAD BrowserENSG00000228315
Genetic variants : HAPMAP91316
Genomic Variants (DGV)GUSBP11 [DGVbeta]
DECIPHERGUSBP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGUSBP11 
Mutations
ICGC Data PortalGUSBP11 
TCGA Data PortalGUSBP11 
Broad Tumor PortalGUSBP11
OASIS PortalGUSBP11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGUSBP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GUSBP11
DgiDB (Drug Gene Interaction Database)GUSBP11
DoCM (Curated mutations)GUSBP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GUSBP11 (select a term)
intoGenGUSBP11
Cancer3DGUSBP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGUSBP11
MedgenGUSBP11
Genetic Testing Registry GUSBP11
NextProtQ6P575 [Medical]
TSGene91316
GENETestsGUSBP11
Target ValidationGUSBP11
Huge Navigator GUSBP11 [HugePedia]
snp3D : Map Gene to Disease91316
BioCentury BCIQGUSBP11
ClinGenGUSBP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91316
Clinical trialGUSBP11
Miscellaneous
canSAR (ICR)GUSBP11 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGUSBP11
EVEXGUSBP11
GoPubMedGUSBP11
iHOPGUSBP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:43:43 CET 2017

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