Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GUSBP3 (GUSB pseudogene 3)

Identity

Alias (NCBI)GUSBP1
SMA3
HGNC (Hugo) GUSBP3
LocusID (NCBI) 653188
Atlas_Id 64124
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69639463 and ends at 69710527 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AOAH (7p14.2)::GUSBP3 (5q13.2)GUSBP3 (5q13.2)::ZNF788 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GUSBP3   37301
Cards
Entrez_Gene (NCBI)GUSBP3    GUSB pseudogene 3
AliasesGUSBP1; SMA3
GeneCards (Weizmann)GUSBP3
Ensembl hg19 (Hinxton)ENSG00000253203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253203 [Gene_View]  ENSG00000253203 [Sequence]  chr5:69639463-69710527 [Contig_View]  GUSBP3 [Vega]
ICGC DataPortalENSG00000253203
TCGA cBioPortalGUSBP3
AceView (NCBI)GUSBP3
Genatlas (Paris)GUSBP3
SOURCE (Princeton)GUSBP3
Genetics Home Reference (NIH)GUSBP3
Genomic and cartography
GoldenPath hg38 (UCSC)GUSBP3  -     chr5:69639463-69710527 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GUSBP3  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathGUSBP3 - 5q13.2 [CytoView hg19]  GUSBP3 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000253203
Genome Data Viewer NCBIGUSBP3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK124130 AK289965 BC051369 BT006760 DT218991
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)GUSBP3
Gene ExpressionGUSBP3 [ NCBI-GEO ]   GUSBP3 [ EBI - ARRAY_EXPRESS ]   GUSBP3 [ SEEK ]   GUSBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)GUSBP3 [ Firebrowse - Broad ]
GenevisibleExpression of GUSBP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653188
GTEX Portal (Tissue expression)GUSBP3
Human Protein AtlasENSG00000253203-GUSBP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15486   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15486  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15486
PhosPhoSitePlusQ15486
Domains : Interpro (EBI)Beta-gal/glucu_dom_sf    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GUSBP3
SuperfamilyQ15486
AlphaFold pdb e-kbQ15486   
Human Protein Atlas [tissue]ENSG00000253203-GUSBP3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q15486
IntAct (EBI)Q15486
BioGRIDGUSBP3
STRING (EMBL)GUSBP3
ZODIACGUSBP3
Ontologies - Pathways
QuickGOQ15486
Ontology : AmiGOskeletal system development  beta-glucuronidase activity  signaling receptor binding  protein binding  extracellular space  nervous system development  glucuronoside catabolic process  carbohydrate binding  
Ontology : EGO-EBIskeletal system development  beta-glucuronidase activity  signaling receptor binding  protein binding  extracellular space  nervous system development  glucuronoside catabolic process  carbohydrate binding  
NDEx NetworkGUSBP3
Atlas of Cancer Signalling NetworkGUSBP3
Wikipedia pathwaysGUSBP3
Orthology - Evolution
OrthoDB653188
GeneTree (enSembl)ENSG00000253203
Phylogenetic Trees/Animal Genes : TreeFamGUSBP3
Homologs : HomoloGeneGUSBP3
Homology/Alignments : Family Browser (UCSC)GUSBP3
Gene fusions - Rearrangements
Fusion : QuiverGUSBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGUSBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GUSBP3
dbVarGUSBP3
ClinVarGUSBP3
MonarchGUSBP3
1000_GenomesGUSBP3 
Exome Variant ServerGUSBP3
GNOMAD BrowserENSG00000253203
Varsome BrowserGUSBP3
ACMGGUSBP3 variants
VarityQ15486
Genomic Variants (DGV)GUSBP3 [DGVbeta]
DECIPHERGUSBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGUSBP3 
Mutations
ICGC Data PortalGUSBP3 
TCGA Data PortalGUSBP3 
Broad Tumor PortalGUSBP3
OASIS PortalGUSBP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGUSBP3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGUSBP3
DgiDB (Drug Gene Interaction Database)GUSBP3
DoCM (Curated mutations)GUSBP3
CIViC (Clinical Interpretations of Variants in Cancer)GUSBP3
Cancer3DGUSBP3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGUSBP3
MedgenGUSBP3
Genetic Testing Registry GUSBP3
NextProtQ15486 [Medical]
GENETestsGUSBP3
Target ValidationGUSBP3
Huge Navigator GUSBP3 [HugePedia]
ClinGenGUSBP3
Clinical trials, drugs, therapy
MyCancerGenomeGUSBP3
Protein Interactions : CTDGUSBP3
PharosQ15486
Clinical trialGUSBP3
Miscellaneous
canSAR (ICR)GUSBP3
HarmonizomeGUSBP3
ARCHS4GUSBP3
DataMed IndexGUSBP3
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGUSBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:55:14 CET 2022

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