Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GVINP1 (GTPase, very large interferon inducible pseudogene 1)

Identity

Alias_namesGVIN1
GVIN1P
GTPase, very large interferon inducible 1
GTPase, very large interferon inducible 1, pseudogene
Alias_symbol (synonym)VLIG-1
FLJ13373
VLIG1
Other alias
HGNC (Hugo) GVINP1
LocusID (NCBI) 387751
Atlas_Id 64128
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6713146 and ends at 6721879 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GVINP1   25813
Cards
Entrez_Gene (NCBI)GVINP1  387751  GTPase, very large interferon inducible pseudogene 1
AliasesGVIN1; GVIN1P; VLIG-1; VLIG1
GeneCards (Weizmann)GVINP1
Ensembl hg19 (Hinxton)ENSG00000254838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254838 [Gene_View]  chr11:6713146-6721879 [Contig_View]  GVINP1 [Vega]
ICGC DataPortalENSG00000254838
TCGA cBioPortalGVINP1
AceView (NCBI)GVINP1
Genatlas (Paris)GVINP1
WikiGenes387751
SOURCE (Princeton)GVINP1
Genetics Home Reference (NIH)GVINP1
Genomic and cartography
GoldenPath hg38 (UCSC)GVINP1  -     chr11:6713146-6721879 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GVINP1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblGVINP1 - 11p15.4 [CytoView hg19]  GVINP1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIGVINP1 [Mapview hg19]  GVINP1 [Mapview hg38]
OMIM616121   
Gene and transcription
Genbank (Entrez)AK023435 AL834507 BX538318 BX538342
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GVINP1
Cluster EST : UnigeneHs.721746 [ NCBI ]
CGAP (NCI)Hs.721746
Alternative Splicing GalleryENSG00000254838
Gene ExpressionGVINP1 [ NCBI-GEO ]   GVINP1 [ EBI - ARRAY_EXPRESS ]   GVINP1 [ SEEK ]   GVINP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GVINP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387751
GTEX Portal (Tissue expression)GVINP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2Y8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2Y8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2Y8
Splice isoforms : SwissVarQ7Z2Y8
PhosPhoSitePlusQ7Z2Y8
Domaine pattern : Prosite (Expaxy)G_VLIG (PS51717)   
Domains : Interpro (EBI)Alpha/beta_knot_MTases    G_VLIG_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GVINP1
DMDM Disease mutations387751
Blocks (Seattle)GVINP1
SuperfamilyQ7Z2Y8
Human Protein AtlasENSG00000254838
Peptide AtlasQ7Z2Y8
IPIIPI00854845   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2Y8
IntAct (EBI)Q7Z2Y8
FunCoupENSG00000254838
BioGRIDGVINP1
STRING (EMBL)GVINP1
ZODIACGVINP1
Ontologies - Pathways
QuickGOQ7Z2Y8
Ontology : AmiGOGTP binding  nucleus  cytosol  
Ontology : EGO-EBIGTP binding  nucleus  cytosol  
NDEx NetworkGVINP1
Atlas of Cancer Signalling NetworkGVINP1
Wikipedia pathwaysGVINP1
Orthology - Evolution
OrthoDB387751
GeneTree (enSembl)ENSG00000254838
Phylogenetic Trees/Animal Genes : TreeFamGVINP1
HOVERGENQ7Z2Y8
HOGENOMQ7Z2Y8
Homologs : HomoloGeneGVINP1
Homology/Alignments : Family Browser (UCSC)GVINP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGVINP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GVINP1
dbVarGVINP1
ClinVarGVINP1
1000_GenomesGVINP1 
Exome Variant ServerGVINP1
ExAC (Exome Aggregation Consortium)GVINP1 (select the gene name)
Genetic variants : HAPMAP387751
Genomic Variants (DGV)GVINP1 [DGVbeta]
DECIPHERGVINP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGVINP1 
Mutations
ICGC Data PortalGVINP1 
TCGA Data PortalGVINP1 
Broad Tumor PortalGVINP1
OASIS PortalGVINP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGVINP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GVINP1
DgiDB (Drug Gene Interaction Database)GVINP1
DoCM (Curated mutations)GVINP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GVINP1 (select a term)
intoGenGVINP1
Cancer3DGVINP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616121   
Orphanet
MedgenGVINP1
Genetic Testing Registry GVINP1
NextProtQ7Z2Y8 [Medical]
TSGene387751
GENETestsGVINP1
Target ValidationGVINP1
Huge Navigator GVINP1 [HugePedia]
snp3D : Map Gene to Disease387751
BioCentury BCIQGVINP1
ClinGenGVINP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387751
Chemical/Pharm GKB GenePA142671703
Clinical trialGVINP1
Miscellaneous
canSAR (ICR)GVINP1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGVINP1
EVEXGVINP1
GoPubMedGVINP1
iHOPGVINP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:10:08 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.